Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 LINC00652-202ENST00000454749 963 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 SNORD42A-201ENST00000459584 64 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 RN7SL308P-201ENST00000464971 297 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC009269.1-201ENST00000470368 833 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC074386.1-201ENST00000476560 767 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 RN7SL516P-201ENST00000496127 297 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 GAPDHP38-201ENST00000503632 1002 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC122710.2-201ENST00000506093 596 ntTSL 4 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 PTTG3P-201ENST00000521862 606 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AP000893.2-201ENST00000527550 433 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC067735.1-201ENST00000551152 526 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 CCDC58P1-201ENST00000578567 430 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 RN7SL311P-201ENST00000579858 306 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC017100.2-201ENST00000584628 355 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 MIR663AHG-213ENST00000596767 837 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC108451.2-201ENST00000603875 538 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC133041.1-201ENST00000608389 201 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 uc_338.21-201ENST00000622458 147 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC019226.1-201ENST00000625666 515 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 CASC19-232ENST00000641480 1244 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 CDK15-201ENST00000260967 1635 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 NPFFR2-204ENST00000395999 1866 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 LRP12-201ENST00000276654 4112 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 CLSPN-201ENST00000251195 4769 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC026398.1-201ENST00000413683 3126 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 DCAF13P1-201ENST00000495256 1330 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 CCDC129-205ENST00000451887 3611 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
CCDC140Q96MF4 AC006116.1-201ENST00000587908 2171 ntBASIC5.72□□□□□ -1.49
CCDC140Q96MF4 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC140Q96MF4 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
CCDC140Q96MF4 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC5.71□□□□□ -1.49
CCDC140Q96MF4 NF1P8-201ENST00000415351 1461 ntBASIC5.71□□□□□ -1.49
CCDC140Q96MF4 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC5.71□□□□□ -1.49
CCDC140Q96MF4 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC140Q96MF4 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC5.71□□□□□ -1.49
CCDC140Q96MF4 AC137056.2-201ENST00000624055 1958 ntBASIC5.71□□□□□ -1.49
CCDC140Q96MF4 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC140Q96MF4 SOS2-202ENST00000543680 3960 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC140Q96MF4 PAPPA-AS2-201ENST00000438048 1854 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 LEKR1-204ENST00000470811 2881 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AL450426.1-201ENST00000635678 1602 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 FLJ42393-201ENST00000623801 2270 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 RGS8-202ENST00000367556 843 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 SNORA51.7-201ENST00000384171 134 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 SNORD15A-201ENST00000384214 148 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 MIR506-201ENST00000384998 124 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 CD209-205ENST00000394161 507 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 SNORA3.1-201ENST00000408166 111 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 RN7SKP129-201ENST00000410288 299 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AL355862.1-201ENST00000412705 353 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 FTOP1-201ENST00000419363 861 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 EEF1GP7-201ENST00000422983 703 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AL356583.2-201ENST00000426536 280 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AL604028.1-201ENST00000430643 598 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC140Q96MF4 RPL37P21-201ENST00000435890 276 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 FDPSP8-201ENST00000438304 1089 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 TRIM60P16-201ENST00000444048 694 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 RPL7P14-201ENST00000449851 741 ntBASIC5.71□□□□□ -1.5
CCDC140Q96MF4 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms