Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC88AQ3V6T2 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 AC022893.2-201ENST00000564832 3296 ntBASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 AP000547.3-204ENST00000588548 2523 ntBASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 RNU1-136P-201ENST00000384181 164 ntBASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 EI24P4-201ENST00000423683 1078 ntBASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 BX679664.2-201ENST00000439282 283 ntBASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 RPS29P33-201ENST00000456717 146 ntBASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 AC068587.1-201ENST00000483613 781 ntBASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 NPM1P42-201ENST00000560329 862 ntBASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 AC009779.8-201ENST00000641684 4384 ntBASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC88AQ3V6T2 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 RPL34P20-201ENST00000442771 351 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC112498.1-201ENST00000444401 332 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC005000.1-201ENST00000536192 288 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 MIR4691-201ENST00000583764 85 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC245389.2-201ENST00000616023 576 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC242843.1-201ENST00000618702 573 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC112694.2-201ENST00000623697 768 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC073869.10-201ENST00000642016 354 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC012213.2-201ENST00000562917 4597 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 H3F3BP1-201ENST00000440551 403 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 RN7SKP67-201ENST00000515905 235 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 AC060780.2-201ENST00000589047 198 ntBASIC6.62□□□□□ -1.35
CCDC88AQ3V6T2 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 OR9K1P-202ENST00000641111 3217 ntBASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 DBIP1-201ENST00000401435 260 ntBASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 MRPS21P2-201ENST00000424704 264 ntBASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 NDUFAF4P2-201ENST00000445374 520 ntBASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 AC012512.1-201ENST00000446594 718 ntBASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 snoU109.5-201ENST00000516231 132 ntBASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 AP002373.2-201ENST00000541631 1060 ntBASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 AP000769.2-201ENST00000602344 396 ntBASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms