Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC8.82□□□□□ -1
CUX1P39880 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC8.82□□□□□ -1
CUX1P39880 AC063943.1-201ENST00000465434 453 ntBASIC8.82□□□□□ -1
CUX1P39880 OR7E128P-201ENST00000532736 1024 ntBASIC8.82□□□□□ -1
CUX1P39880 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC8.82□□□□□ -1
CUX1P39880 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC8.82□□□□□ -1
CUX1P39880 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC8.82□□□□□ -1
CUX1P39880 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC8.82□□□□□ -1
CUX1P39880 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC8.82□□□□□ -1
CUX1P39880 ATP5A1P1-201ENST00000454088 1321 ntBASIC8.82□□□□□ -1
CUX1P39880 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC8.82□□□□□ -1
CUX1P39880 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC8.81□□□□□ -1
CUX1P39880 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC8.81□□□□□ -1
CUX1P39880 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC8.81□□□□□ -1
CUX1P39880 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC8.81□□□□□ -1
CUX1P39880 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CUX1P39880 AP002530.1-201ENST00000405705 684 ntBASIC8.81□□□□□ -1
CUX1P39880 RNA5SP113-201ENST00000410486 84 ntBASIC8.81□□□□□ -1
CUX1P39880 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC8.81□□□□□ -1
CUX1P39880 AC004074.1-201ENST00000421810 1063 ntBASIC8.81□□□□□ -1
CUX1P39880 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC8.81□□□□□ -1
CUX1P39880 C4BPAP2-201ENST00000428434 478 ntBASIC8.81□□□□□ -1
CUX1P39880 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC8.81□□□□□ -1
CUX1P39880 LINC02210-201ENST00000444561 288 ntBASIC8.81□□□□□ -1
CUX1P39880 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC8.81□□□□□ -1
CUX1P39880 AL512310.9-201ENST00000553311 948 ntBASIC8.81□□□□□ -1
CUX1P39880 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC8.81□□□□□ -1
CUX1P39880 AC011487.3-201ENST00000593607 453 ntBASIC8.81□□□□□ -1
CUX1P39880 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC8.81□□□□□ -1
CUX1P39880 AL158152.1-201ENST00000602652 1435 ntBASIC8.81□□□□□ -1
CUX1P39880 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC8.81□□□□□ -1
CUX1P39880 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
CUX1P39880 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
CUX1P39880 AC068769.1-201ENST00000474767 2426 ntBASIC8.81□□□□□ -1
CUX1P39880 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC8.81□□□□□ -1
CUX1P39880 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
CUX1P39880 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC8.81□□□□□ -1
CUX1P39880 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
CUX1P39880 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
CUX1P39880 RNA5SP90-201ENST00000364801 99 ntBASIC8.8□□□□□ -1
CUX1P39880 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC8.8□□□□□ -1
CUX1P39880 MIR600-201ENST00000385007 98 ntBASIC8.8□□□□□ -1
CUX1P39880 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC8.8□□□□□ -1
CUX1P39880 BX323845.1-201ENST00000432417 179 ntBASIC8.8□□□□□ -1
CUX1P39880 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC8.8□□□□□ -1
CUX1P39880 MRPS33P2-201ENST00000507850 322 ntBASIC8.8□□□□□ -1
CUX1P39880 BGLT3-201ENST00000564523 994 ntBASIC8.8□□□□□ -1
CUX1P39880 AC060780.2-201ENST00000589047 198 ntBASIC8.8□□□□□ -1
CUX1P39880 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC8.8□□□□□ -1
CUX1P39880 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC8.8□□□□□ -1
CUX1P39880 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC8.8□□□□□ -1
CUX1P39880 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
CUX1P39880 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
CUX1P39880 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
CUX1P39880 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC8.8□□□□□ -1
CUX1P39880 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CUX1P39880 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
CUX1P39880 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -1
CUX1P39880 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CUX1P39880 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC8.8□□□□□ -1
CUX1P39880 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC8.8□□□□□ -1
CUX1P39880 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC8.8□□□□□ -1
CUX1P39880 RPS26P38-201ENST00000414476 348 ntBASIC8.8□□□□□ -1
CUX1P39880 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC8.8□□□□□ -1
CUX1P39880 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC8.8□□□□□ -1
CUX1P39880 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC8.8□□□□□ -1
CUX1P39880 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC8.8□□□□□ -1
CUX1P39880 AP006289.1-201ENST00000538089 277 ntBASIC8.8□□□□□ -1
CUX1P39880 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC8.8□□□□□ -1
CUX1P39880 MIR3667-201ENST00000581025 74 ntBASIC8.8□□□□□ -1
CUX1P39880 AP003400.3-201ENST00000624904 346 ntBASIC8.8□□□□□ -1
CUX1P39880 AL596275.2-208ENST00000641192 594 ntBASIC8.8□□□□□ -1
CUX1P39880 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC8.79□□□□□ -1
CUX1P39880 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC8.79□□□□□ -1
CUX1P39880 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC8.79□□□□□ -1
CUX1P39880 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
CUX1P39880 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC8.79□□□□□ -1
CUX1P39880 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC8.79□□□□□ -1
CUX1P39880 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC8.79□□□□□ -1
CUX1P39880 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC8.79□□□□□ -1
CUX1P39880 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC8.79□□□□□ -1
CUX1P39880 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
CUX1P39880 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
CUX1P39880 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC8.79□□□□□ -1
CUX1P39880 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC8.79□□□□□ -1
CUX1P39880 PPIAP9-201ENST00000403866 498 ntBASIC8.79□□□□□ -1
CUX1P39880 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC8.79□□□□□ -1
CUX1P39880 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC8.79□□□□□ -1
CUX1P39880 CYCSP42-201ENST00000450823 238 ntBASIC8.79□□□□□ -1
CUX1P39880 RBMY2TP-201ENST00000451162 947 ntBASIC8.79□□□□□ -1
CUX1P39880 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC8.79□□□□□ -1
CUX1P39880 NDUFA12P1-201ENST00000455914 406 ntBASIC8.79□□□□□ -1
CUX1P39880 RPL23AP72-201ENST00000492447 435 ntBASIC8.79□□□□□ -1
CUX1P39880 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC8.79□□□□□ -1
CUX1P39880 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC8.79□□□□□ -1
CUX1P39880 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC8.79□□□□□ -1
CUX1P39880 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC8.79□□□□□ -1
CUX1P39880 AL391358.1-201ENST00000605342 190 ntBASIC8.79□□□□□ -1
CUX1P39880 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CUX1P39880 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC8.79□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms