Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MTND6P2-201ENST00000512226 524 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.17□□□□□ -1.58
SDC1P18827 CYCSP22-201ENST00000517555 339 ntBASIC5.17□□□□□ -1.58
SDC1P18827 IGKV2-4-201ENST00000523070 340 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AC084033.1-201ENST00000550830 633 ntBASIC5.17□□□□□ -1.58
SDC1P18827 RBM22P12-201ENST00000567098 1255 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.17□□□□□ -1.58
SDC1P18827 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.17□□□□□ -1.58
SDC1P18827 AC060766.1-201ENST00000590824 627 ntBASIC5.17□□□□□ -1.58
SDC1P18827 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.17□□□□□ -1.58
SDC1P18827 AC027243.2-201ENST00000602530 724 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AC079315.1-201ENST00000602952 623 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AL365181.4-201ENST00000609800 547 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AC099654.6-201ENST00000636487 512 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SDC1P18827 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.17□□□□□ -1.58
SDC1P18827 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SDC1P18827 SSXP3-201ENST00000442971 1300 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.17□□□□□ -1.58
SDC1P18827 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
SDC1P18827 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
SDC1P18827 AC002525.1-201ENST00000624392 1622 ntBASIC5.16□□□□□ -1.58
SDC1P18827 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.16□□□□□ -1.58
SDC1P18827 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
SDC1P18827 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.16□□□□□ -1.58
SDC1P18827 RN7SKP28-201ENST00000364770 305 ntBASIC5.16□□□□□ -1.58
SDC1P18827 OR1L6-202ENST00000373684 1044 ntBASIC5.16□□□□□ -1.58
SDC1P18827 SNORA16A-201ENST00000384342 137 ntBASIC5.16□□□□□ -1.58
SDC1P18827 RNA5SP187-201ENST00000384400 119 ntBASIC5.16□□□□□ -1.58
SDC1P18827 VN1R12P-201ENST00000403778 876 ntBASIC5.16□□□□□ -1.58
SDC1P18827 SLC20A1P1-201ENST00000413906 956 ntBASIC5.16□□□□□ -1.58
SDC1P18827 AL596448.1-201ENST00000415024 392 ntBASIC5.16□□□□□ -1.58
SDC1P18827 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.16□□□□□ -1.58
SDC1P18827 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.16□□□□□ -1.58
SDC1P18827 SUMO2P3-201ENST00000438311 288 ntBASIC5.16□□□□□ -1.58
SDC1P18827 HMGN1P2-201ENST00000445197 310 ntBASIC5.16□□□□□ -1.58
SDC1P18827 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.16□□□□□ -1.58
SDC1P18827 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.16□□□□□ -1.58
SDC1P18827 LDHBP2-201ENST00000456969 1005 ntBASIC5.16□□□□□ -1.58
SDC1P18827 NRBF2P4-201ENST00000520874 850 ntBASIC5.16□□□□□ -1.58
SDC1P18827 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.16□□□□□ -1.58
SDC1P18827 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.16□□□□□ -1.58
SDC1P18827 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.16□□□□□ -1.58
SDC1P18827 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.16□□□□□ -1.58
SDC1P18827 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.16□□□□□ -1.58
SDC1P18827 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.16□□□□□ -1.58
SDC1P18827 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.16□□□□□ -1.58
SDC1P18827 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.16□□□□□ -1.58
SDC1P18827 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.16□□□□□ -1.58
SDC1P18827 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
SDC1P18827 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
SDC1P18827 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.16□□□□□ -1.58
SDC1P18827 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
SDC1P18827 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.16□□□□□ -1.58
SDC1P18827 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
SDC1P18827 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.16□□□□□ -1.58
SDC1P18827 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.16□□□□□ -1.58
SDC1P18827 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
SDC1P18827 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SDC1P18827 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SDC1P18827 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SDC1P18827 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.58
SDC1P18827 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
SDC1P18827 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
SDC1P18827 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
SDC1P18827 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SDC1P18827 AC015689.2-201ENST00000528172 1738 ntBASIC5.15□□□□□ -1.58
SDC1P18827 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
SDC1P18827 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SDC1P18827 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
SDC1P18827 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SDC1P18827 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SDC1P18827 RNA5SP46-201ENST00000362370 120 ntBASIC5.15□□□□□ -1.59
SDC1P18827 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SDC1P18827 SNORA48.4-201ENST00000391089 134 ntBASIC5.15□□□□□ -1.59
SDC1P18827 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
SDC1P18827 EEF1B2P8-201ENST00000414101 671 ntBASIC5.15□□□□□ -1.59
SDC1P18827 RPL34P3-201ENST00000421454 338 ntBASIC5.15□□□□□ -1.59
SDC1P18827 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.15□□□□□ -1.59
SDC1P18827 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.15□□□□□ -1.59
SDC1P18827 BX119321.1-201ENST00000428912 797 ntBASIC5.15□□□□□ -1.59
SDC1P18827 RPL12P17-201ENST00000432393 498 ntBASIC5.15□□□□□ -1.59
SDC1P18827 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms