Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.85□□□□□ -1.31
COL6A1P12109 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 AC011330.2-201ENST00000621680 635 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
COL6A1P12109 AP003499.2-201ENST00000624100 483 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC098679.4-201ENST00000624241 654 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AL132640.3-201ENST00000630473 177 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
COL6A1P12109 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
COL6A1P12109 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 AC010168.2-201ENST00000562691 5428 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC6.85□□□□□ -1.31
COL6A1P12109 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
COL6A1P12109 PARP4P1-201ENST00000435945 2337 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
COL6A1P12109 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
COL6A1P12109 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6.84□□□□□ -1.31
COL6A1P12109 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.84□□□□□ -1.31
COL6A1P12109 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
COL6A1P12109 SNORA70-201ENST00000384436 135 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AL391422.1-201ENST00000402155 436 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 RN7SKP216-201ENST00000411050 312 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 Y_RNA.625-201ENST00000411256 107 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC6.84□□□□□ -1.31
COL6A1P12109 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 BMS1P17-202ENST00000416720 316 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 HYALP1-201ENST00000417674 1279 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC6.84□□□□□ -1.31
COL6A1P12109 USP9YP11-201ENST00000427537 717 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC6.84□□□□□ -1.31
COL6A1P12109 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC6.84□□□□□ -1.31
COL6A1P12109 ART2BP-201ENST00000453501 499 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC6.84□□□□□ -1.31
COL6A1P12109 RPL32P14-201ENST00000463196 378 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC6.84□□□□□ -1.31
COL6A1P12109 AC022336.1-201ENST00000475510 337 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC069306.1-201ENST00000507006 843 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC106800.2-201ENST00000514009 1103 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 Y_RNA.688-201ENST00000516565 95 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC6.84□□□□□ -1.31
COL6A1P12109 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC6.84□□□□□ -1.31
COL6A1P12109 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC6.84□□□□□ -1.31
COL6A1P12109 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.84□□□□□ -1.31
COL6A1P12109 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC6.84□□□□□ -1.31
COL6A1P12109 MTCYBP33-201ENST00000575007 1130 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC6.84□□□□□ -1.31
COL6A1P12109 MIR1269B-201ENST00000580405 75 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 MIR4505-201ENST00000582238 73 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AL953862.2-201ENST00000603089 820 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC005252.1-201ENST00000604518 1063 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC6.84□□□□□ -1.31
COL6A1P12109 AL645933.2-201ENST00000606743 1207 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC245008.1-201ENST00000608123 476 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC124016.2-201ENST00000610058 665 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC021755.4-201ENST00000616620 456 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC026585.1-201ENST00000619582 524 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 AC091304.6-201ENST00000619761 202 ntBASIC6.84□□□□□ -1.31
COL6A1P12109 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC6.84□□□□□ -1.31
COL6A1P12109 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL6A1P12109 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.84□□□□□ -1.31
COL6A1P12109 AC127070.3-201ENST00000503695 3263 ntBASIC6.84□□□□□ -1.32
COL6A1P12109 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL6A1P12109 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC6.84□□□□□ -1.32
COL6A1P12109 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
COL6A1P12109 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 AC009501.3-201ENST00000605001 1352 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
COL6A1P12109 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
COL6A1P12109 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
COL6A1P12109 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.83□□□□□ -1.32
COL6A1P12109 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.83□□□□□ -1.32
COL6A1P12109 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
COL6A1P12109 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.83□□□□□ -1.32
COL6A1P12109 MTCO3P4-201ENST00000419236 787 ntBASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 152.3 ms