Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AP005119.1-201ENST00000580956 292 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LMX1BO60663 AC006115.2-201ENST00000596823 202 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.08□□□□□ -1.6
LMX1BO60663 AL671309.1-201ENST00000603750 544 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AC068313.1-201ENST00000604028 1008 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 PPATP2-201ENST00000605635 508 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AC018645.2-201ENST00000609151 472 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AC090912.3-201ENST00000609775 533 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AC063944.3-201ENST00000609969 533 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AP006248.3-201ENST00000623580 594 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.08□□□□□ -1.6
LMX1BO60663 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 AL049634.1-201ENST00000453770 1720 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AC104964.3-201ENST00000606115 2860 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
LMX1BO60663 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LMX1BO60663 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.07□□□□□ -1.6
LMX1BO60663 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 GNL2P1-201ENST00000451274 2190 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.07□□□□□ -1.6
LMX1BO60663 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
LMX1BO60663 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.07□□□□□ -1.6
LMX1BO60663 AL354868.1-201ENST00000417077 482 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 BMS1P13-201ENST00000417301 885 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC073464.3-201ENST00000422564 712 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.07□□□□□ -1.6
LMX1BO60663 CRIP1P1-201ENST00000427567 185 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 NPM1P25-201ENST00000429734 854 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC096775.1-201ENST00000437724 448 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 BMS1P10-201ENST00000443754 1120 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 AL445466.1-201ENST00000448432 357 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 RPS27AP2-201ENST00000457576 465 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 ATP5G1P3-201ENST00000463301 410 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 UBFD1P1-201ENST00000473259 814 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 ATP5LP3-201ENST00000514223 304 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 OR5D2P-201ENST00000524390 911 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC5.07□□□□□ -1.6
LMX1BO60663 MIR3176-201ENST00000582210 90 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC006116.5-201ENST00000591936 559 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 COX6CP7-201ENST00000597056 208 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.07□□□□□ -1.6
LMX1BO60663 ABI1P1-201ENST00000603375 1120 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AL049840.6-201ENST00000604583 345 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AC018690.1-201ENST00000608144 626 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC5.07□□□□□ -1.6
LMX1BO60663 AC004908.3-201ENST00000610248 625 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AL445670.1-201ENST00000618889 801 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AC018628.1-201ENST00000624147 3819 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AP003485.1-201ENST00000625093 753 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.07□□□□□ -1.6
LMX1BO60663 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
LMX1BO60663 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 AL591135.1-201ENST00000401578 5914 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 AF287957.1-201ENST00000607368 1595 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.07□□□□□ -1.6
LMX1BO60663 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
LMX1BO60663 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 AC004656.1-201ENST00000568479 4951 ntBASIC5.07□□□□□ -1.6
LMX1BO60663 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LMX1BO60663 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
LMX1BO60663 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
LMX1BO60663 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
LMX1BO60663 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 NEPNP-201ENST00000404786 1371 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms