Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 OR4A2P-201ENST00000527276 913 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 SLC25A51P2-201ENST00000535708 889 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 DCN-209ENST00000546745 1026 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 ADI1P3-201ENST00000549509 470 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC023080.1-201ENST00000551663 931 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL590229.1-201ENST00000603497 542 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC097641.3-201ENST00000613523 464 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AP001264.1-201ENST00000620602 703 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 LINC00216-201ENST00000623548 1126 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC091965.5-201ENST00000624785 342 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 SGO1-AS1-206ENST00000635369 442 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 CREM-217ENST00000439705 2306 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 RBPJP6-201ENST00000411556 1431 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 BTK-209ENST00000618050 2417 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC092070.2-203ENST00000598377 3644 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 AC015799.1-201ENST00000622996 3122 ntBASIC7.41□□□□□ -1.22
CCDC39Q9UFE4 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 RNU6-386P-201ENST00000362650 107 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 ZNF37CP-201ENST00000406795 241 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 TRGV7-201ENST00000427089 353 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 HNRNPA1P18-201ENST00000433537 927 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AL513321.1-201ENST00000441175 761 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 GAPDHP33-201ENST00000443168 1013 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AL590004.3-202ENST00000445883 451 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 RARRES2P3-201ENST00000457739 473 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AC099340.1-201ENST00000475247 599 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 NPM1P29-201ENST00000483112 803 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AC079064.1-201ENST00000528365 362 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AP002004.1-206ENST00000532441 876 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 MTCO2P15-201ENST00000532655 656 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AC124312.4-201ENST00000605533 310 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AP002802.2-201ENST00000605877 235 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AL354976.1-201ENST00000613843 387 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AC005514.1-201ENST00000623521 208 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 CASC19-264ENST00000641912 1184 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 AL121936.2-201ENST00000641935 662 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 LRRC37A15P-201ENST00000514785 1355 ntBASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC39Q9UFE4 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.23
CCDC39Q9UFE4 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.23
CCDC39Q9UFE4 AC023245.2-201ENST00000530760 2978 ntBASIC7.4□□□□□ -1.23
CCDC39Q9UFE4 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CCDC39Q9UFE4 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CCDC39Q9UFE4 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 DYDC2-201ENST00000256039 1842 ntAPPRIS P3 TSL 2 BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC39Q9UFE4 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms