Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 VDAC2P4-201ENST00000452925 711 ntBASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC42Q96M95 RN7SL72P-201ENST00000460697 269 ntBASIC5.82□□□□□ -1.48
CCDC42Q96M95 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
CCDC42Q96M95 ENPP7P11-201ENST00000505915 627 ntBASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC022360.1-201ENST00000521058 340 ntBASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC42Q96M95 IGBP1P1-201ENST00000554337 1009 ntBASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC040958.1-201ENST00000561102 201 ntBASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC42Q96M95 Z95327.3-201ENST00000610385 572 ntBASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC109583.2-201ENST00000617367 129 ntBASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC104623.2-202ENST00000623477 4002 ntBASIC5.82□□□□□ -1.48
CCDC42Q96M95 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC42Q96M95 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC42Q96M95 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC42Q96M95 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC42Q96M95 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC42Q96M95 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC42Q96M95 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC42Q96M95 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 TRIM51GP-201ENST00000534741 1350 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC42Q96M95 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC42Q96M95 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 MTCO1P7-201ENST00000419523 1542 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 HMGB1P20-201ENST00000402555 677 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 GAPDHP42-201ENST00000406848 981 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 RPL12P9-201ENST00000412942 488 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 PCNPP4-201ENST00000414817 517 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 RPL12P17-201ENST00000432393 498 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 AC022133.1-201ENST00000490961 571 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 EIF3LP3-201ENST00000495197 822 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 MYL12BP2-201ENST00000503948 512 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC42Q96M95 AL591926.1-201ENST00000620542 217 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 AC073592.6-201ENST00000624271 415 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 AP003400.3-201ENST00000624904 346 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 AC008691.1-209ENST00000642094 814 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC42Q96M95 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC42Q96M95 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC42Q96M95 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC42Q96M95 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC42Q96M95 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC42Q96M95 AC073136.1-201ENST00000449426 2884 ntBASIC5.81□□□□□ -1.48
CCDC42Q96M95 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC42Q96M95 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC42Q96M95 LINC01963-201ENST00000562038 3148 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC42Q96M95 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 OR9G4-201ENST00000302957 984 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 RNU1-65P-201ENST00000363919 148 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 RNA5SP394-201ENST00000364216 119 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 DBIP1-201ENST00000401435 260 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 RPL21P67-201ENST00000402896 478 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 RPS3AP2-201ENST00000407190 754 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 AL121878.1-201ENST00000418638 859 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC124944.2-201ENST00000429866 1242 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 TCEA1P3-201ENST00000443005 880 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AL450996.1-201ENST00000445574 1202 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AP006222.1-205ENST00000450734 457 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC092754.1-201ENST00000472975 479 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 MTND6P2-201ENST00000512226 524 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 MRPS21P7-201ENST00000566937 238 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 AC009027.1-201ENST00000604510 479 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AL359091.2-201ENST00000609303 556 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AP005431.1-201ENST00000618479 319 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AL353684.1-201ENST00000622677 1120 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC42Q96M95 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms