Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RNU6-386P-201ENST00000362650 107 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 RNA5SP30-201ENST00000365552 115 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 BPHL-201ENST00000380368 797 ntTSL 5 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC009804.1-201ENST00000400949 179 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 AL354868.1-201ENST00000417077 482 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 Z85994.2-201ENST00000434327 452 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 AP000547.1-201ENST00000454360 617 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 RANP1-206ENST00000455094 651 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC004129.2-201ENST00000457229 287 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC089999.1-201ENST00000460336 374 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 RPS23P2-201ENST00000463671 415 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC006539.1-201ENST00000481419 501 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC105384.2-201ENST00000508433 640 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC097486.1-201ENST00000515331 210 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC136777.2-201ENST00000522979 358 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 GTF2IP11-201ENST00000526931 420 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC090424.1-201ENST00000535243 736 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC244502.2-201ENST00000543361 851 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 AC020915.5-201ENST00000596836 964 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 SUGT1P3-202ENST00000604259 383 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 CASC19-264ENST00000641912 1184 ntBASIC6.07□□□□□ -1.44
USP41Q3LFD5 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP41Q3LFD5 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP41Q3LFD5 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP41Q3LFD5 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP41Q3LFD5 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP41Q3LFD5 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 SAMM50P1-201ENST00000455403 1399 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC235565.1-201ENST00000456962 1325 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 KYNUP3-201ENST00000574386 1341 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 MIR133A2-201ENST00000347538 102 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 RNU4-2-201ENST00000365668 141 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 RNU4-34P-201ENST00000410431 124 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC114878.1-201ENST00000441166 358 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 RN7SL51P-201ENST00000468230 285 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 ATG10-208ENST00000513634 618 ntTSL 2 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 RNU6-1334P-201ENST00000516032 105 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AL121594.2-201ENST00000541658 472 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 PPATP2-201ENST00000605635 508 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 AC132068.1-201ENST00000623805 459 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 LINC01963-201ENST00000562038 3148 ntBASIC6.06□□□□□ -1.44
USP41Q3LFD5 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
USP41Q3LFD5 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.06□□□□□ -1.44
USP41Q3LFD5 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USP41Q3LFD5 AL513548.1-201ENST00000562904 1724 ntBASIC6.05□□□□□ -1.44
USP41Q3LFD5 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USP41Q3LFD5 AL590763.1-201ENST00000398297 1545 ntBASIC6.05□□□□□ -1.44
USP41Q3LFD5 AP000473.2-201ENST00000602659 1537 ntBASIC6.05□□□□□ -1.44
USP41Q3LFD5 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
USP41Q3LFD5 AC092451.3-201ENST00000625067 1343 ntBASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms