Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL592221.1-201ENST00000605266 382 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AC069545.1-201ENST00000605671 358 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AL159169.2-201ENST00000610061 1269 ntBASIC6.49□□□□□ -1.37
RNF4P78317 Z99129.1-201ENST00000612510 255 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AC026951.2-201ENST00000613847 241 ntBASIC6.49□□□□□ -1.37
RNF4P78317 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 PFKM-232ENST00000629846 381 ntTSL 4 BASIC6.49□□□□□ -1.37
RNF4P78317 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC6.49□□□□□ -1.37
RNF4P78317 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 AC011471.4-201ENST00000638271 216 ntBASIC6.49□□□□□ -1.37
RNF4P78317 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.49□□□□□ -1.37
RNF4P78317 AC079178.2-201ENST00000439323 1624 ntBASIC6.49□□□□□ -1.37
RNF4P78317 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC6.49□□□□□ -1.37
RNF4P78317 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC6.49□□□□□ -1.37
RNF4P78317 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC6.49□□□□□ -1.37
RNF4P78317 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC6.49□□□□□ -1.37
RNF4P78317 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.49□□□□□ -1.37
RNF4P78317 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
RNF4P78317 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.48□□□□□ -1.37
RNF4P78317 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
RNF4P78317 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 RNU6-500P-201ENST00000362349 107 ntBASIC6.48□□□□□ -1.37
RNF4P78317 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 RN7SKP62-201ENST00000384539 329 ntBASIC6.48□□□□□ -1.37
RNF4P78317 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 AP000357.1-201ENST00000409926 1165 ntBASIC6.48□□□□□ -1.37
RNF4P78317 RN7SKP148-201ENST00000410179 275 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AC007899.1-201ENST00000412776 775 ntBASIC6.48□□□□□ -1.37
RNF4P78317 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC6.48□□□□□ -1.37
RNF4P78317 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC6.48□□□□□ -1.37
RNF4P78317 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 AC093084.1-201ENST00000424233 687 ntBASIC6.48□□□□□ -1.37
RNF4P78317 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 AC018804.1-201ENST00000430381 618 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 HMGN1P6-201ENST00000438508 291 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 AL034399.1-201ENST00000451535 380 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 AC112225.1-201ENST00000508230 297 ntBASIC6.48□□□□□ -1.37
RNF4P78317 RNA5SP96-201ENST00000516041 107 ntBASIC6.48□□□□□ -1.37
RNF4P78317 RNU6-405P-201ENST00000516637 110 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AC113191.1-201ENST00000517759 403 ntBASIC6.48□□□□□ -1.37
RNF4P78317 CARSP2-201ENST00000520688 277 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AC083923.1-201ENST00000523708 376 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AP001317.1-201ENST00000531194 960 ntBASIC6.48□□□□□ -1.37
RNF4P78317 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
RNF4P78317 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 AC069240.2-201ENST00000550242 609 ntBASIC6.48□□□□□ -1.37
RNF4P78317 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC6.48□□□□□ -1.37
RNF4P78317 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.48□□□□□ -1.37
RNF4P78317 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC6.48□□□□□ -1.37
RNF4P78317 RPS27AP19-201ENST00000597285 458 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AC083899.3-201ENST00000603413 594 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AC011451.2-201ENST00000604303 598 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AC009220.3-201ENST00000604318 586 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AC116651.1-201ENST00000609724 556 ntBASIC6.48□□□□□ -1.37
RNF4P78317 PTCHD3P1-201ENST00000612350 537 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AC069209.1-201ENST00000619282 651 ntBASIC6.48□□□□□ -1.37
RNF4P78317 AC004836.1-201ENST00000623032 634 ntBASIC6.48□□□□□ -1.37
RNF4P78317 TEX41-279ENST00000629149 609 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 AC140479.4-205ENST00000636339 820 ntBASIC6.48□□□□□ -1.37
RNF4P78317 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC6.48□□□□□ -1.37
RNF4P78317 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC6.48□□□□□ -1.37
RNF4P78317 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.48□□□□□ -1.37
RNF4P78317 MTND4P31-201ENST00000425607 1343 ntBASIC6.48□□□□□ -1.37
RNF4P78317 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
RNF4P78317 AP002800.1-201ENST00000624982 2225 ntBASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 246.9 ms