Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.17□□□□□ -1.58
FOXA1P55317 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.17□□□□□ -1.58
FOXA1P55317 RN7SKP292-201ENST00000365522 317 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
FOXA1P55317 CXADRP1-201ENST00000398098 1095 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 HMGN1P20-201ENST00000411849 300 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.17□□□□□ -1.58
FOXA1P55317 BMS1P17-202ENST00000416720 316 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
FOXA1P55317 BX119904.3-201ENST00000428194 957 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXA1P55317 RPL12P17-201ENST00000432393 498 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.17□□□□□ -1.58
FOXA1P55317 AC090018.1-201ENST00000434369 367 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 AL672138.1-201ENST00000450604 1015 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 CBX1P5-201ENST00000475330 559 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 RPL7P41-201ENST00000485823 957 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 RN7SL814P-201ENST00000487715 300 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXA1P55317 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.17□□□□□ -1.58
FOXA1P55317 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXA1P55317 NRBF2P4-201ENST00000520874 850 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXA1P55317 AC078878.1-201ENST00000539832 958 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 AL049872.1-201ENST00000556323 322 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXA1P55317 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXA1P55317 AC093524.1-201ENST00000564266 1094 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 MIR4271-201ENST00000582451 67 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.17□□□□□ -1.58
FOXA1P55317 AC100767.2-201ENST00000604840 693 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 CXADRP3-202ENST00000617265 1100 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 AC109583.2-201ENST00000617367 129 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 CU639417.4-201ENST00000623928 207 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 MTCO1P1-201ENST00000624263 1081 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXA1P55317 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
FOXA1P55317 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
FOXA1P55317 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
FOXA1P55317 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.17□□□□□ -1.58
FOXA1P55317 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
FOXA1P55317 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
FOXA1P55317 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXA1P55317 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.17□□□□□ -1.58
FOXA1P55317 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
FOXA1P55317 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.16□□□□□ -1.58
FOXA1P55317 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.16□□□□□ -1.58
FOXA1P55317 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
FOXA1P55317 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.16□□□□□ -1.58
FOXA1P55317 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
FOXA1P55317 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.16□□□□□ -1.58
FOXA1P55317 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 RNU1-19P-201ENST00000363306 165 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 RNU4-2-201ENST00000365668 141 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.16□□□□□ -1.58
FOXA1P55317 AL358178.1-201ENST00000407698 397 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 EEF1B2P8-201ENST00000414101 671 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXA1P55317 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 RPS3P2-201ENST00000421346 701 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
FOXA1P55317 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXA1P55317 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXA1P55317 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.16□□□□□ -1.58
FOXA1P55317 AC245028.2-201ENST00000458673 253 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.16□□□□□ -1.58
FOXA1P55317 NIFKP7-201ENST00000503365 834 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 MYL12BP2-201ENST00000503948 512 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 SCARNA16.4-201ENST00000516956 187 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 AC100784.1-201ENST00000522790 310 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.16□□□□□ -1.58
FOXA1P55317 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXA1P55317 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXA1P55317 AC022884.2-201ENST00000578535 580 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 AC011626.1-201ENST00000604710 562 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
FOXA1P55317 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.16□□□□□ -1.58
FOXA1P55317 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.16□□□□□ -1.58
FOXA1P55317 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 AC011755.1-201ENST00000623763 2049 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
FOXA1P55317 SMG1P7-201ENST00000565246 2704 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 TRIM51GP-201ENST00000534741 1350 ntBASIC5.16□□□□□ -1.58
FOXA1P55317 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
FOXA1P55317 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.15□□□□□ -1.58
FOXA1P55317 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.15□□□□□ -1.58
FOXA1P55317 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
FOXA1P55317 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
FOXA1P55317 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.58
FOXA1P55317 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.15□□□□□ -1.58
FOXA1P55317 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
FOXA1P55317 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.15□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms