Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GSTM5P1-201ENST00000434751 660 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.75□□□□□ -1.49
COL4A4P53420 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.75□□□□□ -1.49
COL4A4P53420 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.75□□□□□ -1.49
COL4A4P53420 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.75□□□□□ -1.49
COL4A4P53420 RPL23AP72-201ENST00000492447 435 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 GTF2F2P1-201ENST00000511083 675 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 MTND6P2-201ENST00000512226 524 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.75□□□□□ -1.49
COL4A4P53420 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.75□□□□□ -1.49
COL4A4P53420 OR5AN2P-201ENST00000534535 896 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.75□□□□□ -1.49
COL4A4P53420 AP000769.2-201ENST00000602344 396 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL4A4P53420 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.75□□□□□ -1.49
COL4A4P53420 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL4A4P53420 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A4P53420 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A4P53420 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A4P53420 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A4P53420 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.74□□□□□ -1.49
COL4A4P53420 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A4P53420 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A4P53420 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC5.74□□□□□ -1.49
COL4A4P53420 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC5.74□□□□□ -1.49
COL4A4P53420 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A4P53420 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
COL4A4P53420 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL4A4P53420 RNU1-146P-201ENST00000364015 165 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 RNU4-2-201ENST00000365668 141 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 MIR105-1-201ENST00000385222 81 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL4A4P53420 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.74□□□□□ -1.49
COL4A4P53420 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.74□□□□□ -1.49
COL4A4P53420 AL451063.1-201ENST00000450164 1133 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 RN7SL188P-201ENST00000469842 285 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 SCARNA16.4-201ENST00000516956 187 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 AC136777.2-201ENST00000522979 358 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 OR8Q1P-201ENST00000526467 655 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 AC005000.1-201ENST00000536192 288 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 AL162431.4-201ENST00000604674 411 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A4P53420 AC068831.8-201ENST00000620171 435 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 MTCO1P1-201ENST00000624263 1081 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 AC009779.8-201ENST00000641684 4384 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A4P53420 AC073342.2-201ENST00000595842 1800 ntBASIC5.74□□□□□ -1.49
COL4A4P53420 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC5.74□□□□□ -1.49
COL4A4P53420 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL4A4P53420 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC5.74□□□□□ -1.49
COL4A4P53420 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
COL4A4P53420 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 AC138907.8-201ENST00000623981 2256 ntBASIC5.73□□□□□ -1.49
COL4A4P53420 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
COL4A4P53420 U3.28-201ENST00000391249 210 ntBASIC5.73□□□□□ -1.49
COL4A4P53420 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.73□□□□□ -1.49
COL4A4P53420 NPM1P40-201ENST00000412758 733 ntBASIC5.73□□□□□ -1.49
COL4A4P53420 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.73□□□□□ -1.49
COL4A4P53420 P2RY10P2-201ENST00000416730 913 ntBASIC5.73□□□□□ -1.49
COL4A4P53420 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.73□□□□□ -1.49
COL4A4P53420 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.73□□□□□ -1.49
COL4A4P53420 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
COL4A4P53420 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.73□□□□□ -1.49
COL4A4P53420 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.73□□□□□ -1.49
COL4A4P53420 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.73□□□□□ -1.49
COL4A4P53420 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.73□□□□□ -1.49
COL4A4P53420 EIF3FP1-201ENST00000613970 806 ntBASIC5.73□□□□□ -1.49
COL4A4P53420 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.73□□□□□ -1.49
COL4A4P53420 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
COL4A4P53420 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 MSL3P1-202ENST00000440028 1468 ntBASIC5.73□□□□□ -1.49
COL4A4P53420 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 AC114774.1-201ENST00000507410 1770 ntBASIC5.73□□□□□ -1.49
COL4A4P53420 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.73□□□□□ -1.49
COL4A4P53420 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.73□□□□□ -1.49
COL4A4P53420 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.73□□□□□ -1.49
COL4A4P53420 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC5.73□□□□□ -1.49
COL4A4P53420 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL4A4P53420 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.73□□□□□ -1.49
COL4A4P53420 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.72□□□□□ -1.49
COL4A4P53420 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL4A4P53420 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A4P53420 USP9YP9-201ENST00000429406 715 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.72□□□□□ -1.49
COL4A4P53420 AC097484.1-201ENST00000471148 389 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 AC068587.1-201ENST00000483613 781 ntBASIC5.72□□□□□ -1.49
COL4A4P53420 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.72□□□□□ -1.49
COL4A4P53420 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.72□□□□□ -1.49
COL4A4P53420 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.72□□□□□ -1.49
COL4A4P53420 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.72□□□□□ -1.49
COL4A4P53420 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms