Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC147055.3-201ENST00000510547 851 ntBASIC5.3□□□□□ -1.56
SOX2P48431 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX2P48431 AC112673.1-201ENST00000513168 575 ntBASIC5.3□□□□□ -1.56
SOX2P48431 MINOS1P4-201ENST00000515470 318 ntBASIC5.3□□□□□ -1.56
SOX2P48431 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX2P48431 RN7SKP141-201ENST00000516167 338 ntBASIC5.3□□□□□ -1.56
SOX2P48431 RN7SKP288-201ENST00000516227 268 ntBASIC5.3□□□□□ -1.56
SOX2P48431 RN7SKP253-201ENST00000516424 309 ntBASIC5.3□□□□□ -1.56
SOX2P48431 RNA5SP206-201ENST00000516703 121 ntBASIC5.3□□□□□ -1.56
SOX2P48431 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.3□□□□□ -1.56
SOX2P48431 AP001636.2-201ENST00000525517 696 ntBASIC5.3□□□□□ -1.56
SOX2P48431 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX2P48431 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX2P48431 AC087888.1-201ENST00000550884 1254 ntBASIC5.3□□□□□ -1.56
SOX2P48431 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX2P48431 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX2P48431 AC027455.1-201ENST00000574104 594 ntBASIC5.3□□□□□ -1.56
SOX2P48431 AC024267.3-201ENST00000579673 562 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX2P48431 OR7E19P-202ENST00000589942 844 ntBASIC5.3□□□□□ -1.56
SOX2P48431 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX2P48431 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX2P48431 uc_338.26-201ENST00000612659 160 ntBASIC5.3□□□□□ -1.56
SOX2P48431 AC079395.3-201ENST00000615161 484 ntBASIC5.3□□□□□ -1.56
SOX2P48431 AC008115.4-201ENST00000619780 775 ntBASIC5.3□□□□□ -1.56
SOX2P48431 AC004232.3-201ENST00000622977 525 ntBASIC5.3□□□□□ -1.56
SOX2P48431 AC019226.2-201ENST00000625973 424 ntBASIC5.3□□□□□ -1.56
SOX2P48431 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX2P48431 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX2P48431 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX2P48431 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC5.3□□□□□ -1.56
SOX2P48431 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX2P48431 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SOX2P48431 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX2P48431 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SOX2P48431 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX2P48431 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX2P48431 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SOX2P48431 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX2P48431 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX2P48431 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX2P48431 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.3□□□□□ -1.56
SOX2P48431 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SOX2P48431 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX2P48431 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
SOX2P48431 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
SOX2P48431 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX2P48431 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 OR56A4-201ENST00000330728 1209 ntBASIC5.29□□□□□ -1.56
SOX2P48431 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SOX2P48431 RNA5SP346-201ENST00000363541 121 ntBASIC5.29□□□□□ -1.56
SOX2P48431 NFU1P1-201ENST00000413128 774 ntBASIC5.29□□□□□ -1.56
SOX2P48431 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX2P48431 LIPT1P1-201ENST00000415870 1186 ntBASIC5.29□□□□□ -1.56
SOX2P48431 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX2P48431 RPL21P50-201ENST00000417698 477 ntBASIC5.29□□□□□ -1.56
SOX2P48431 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.29□□□□□ -1.56
SOX2P48431 EIF4A1P1-201ENST00000420241 934 ntBASIC5.29□□□□□ -1.56
SOX2P48431 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX2P48431 REREP1Y-201ENST00000422655 198 ntBASIC5.29□□□□□ -1.56
SOX2P48431 OSTCP5-201ENST00000425293 453 ntBASIC5.29□□□□□ -1.56
SOX2P48431 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX2P48431 MTCO2P20-201ENST00000437339 673 ntBASIC5.29□□□□□ -1.56
SOX2P48431 MTCYBP31-201ENST00000438855 1122 ntBASIC5.29□□□□□ -1.56
SOX2P48431 REREP2Y-201ENST00000439103 200 ntBASIC5.29□□□□□ -1.56
SOX2P48431 NPM1P23-201ENST00000440193 849 ntBASIC5.29□□□□□ -1.56
SOX2P48431 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX2P48431 CXCR2P1-202ENST00000443392 1074 ntBASIC5.29□□□□□ -1.56
SOX2P48431 RPL5P10-201ENST00000445207 894 ntBASIC5.29□□□□□ -1.56
SOX2P48431 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX2P48431 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX2P48431 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX2P48431 OSTCP1-201ENST00000455507 450 ntBASIC5.29□□□□□ -1.56
SOX2P48431 AL354872.1-201ENST00000456361 967 ntBASIC5.29□□□□□ -1.56
SOX2P48431 RPL12P31-201ENST00000478433 450 ntBASIC5.29□□□□□ -1.56
SOX2P48431 RPL23AP40-201ENST00000487630 390 ntBASIC5.29□□□□□ -1.56
SOX2P48431 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX2P48431 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX2P48431 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX2P48431 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX2P48431 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX2P48431 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 AC005351.1-201ENST00000511152 786 ntBASIC5.29□□□□□ -1.56
SOX2P48431 AC093816.1-201ENST00000515076 913 ntBASIC5.29□□□□□ -1.56
SOX2P48431 snoU109.5-201ENST00000516231 132 ntBASIC5.29□□□□□ -1.56
SOX2P48431 OR10V3P-201ENST00000525712 725 ntBASIC5.29□□□□□ -1.56
SOX2P48431 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX2P48431 AP003717.3-201ENST00000544832 1180 ntBASIC5.29□□□□□ -1.56
SOX2P48431 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX2P48431 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX2P48431 RN7SL32P-201ENST00000580514 281 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms