Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RPL6P30-201ENST00000443382 862 ntBASIC4.87□□□□□ -1.63
CDX1P47902 AL590004.3-202ENST00000445883 451 ntBASIC4.87□□□□□ -1.63
CDX1P47902 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CDX1P47902 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC4.87□□□□□ -1.63
CDX1P47902 AC017099.1-201ENST00000448261 1028 ntBASIC4.87□□□□□ -1.63
CDX1P47902 HIGD1AP16-201ENST00000450986 258 ntBASIC4.87□□□□□ -1.63
CDX1P47902 CABYRP1-201ENST00000465493 1045 ntBASIC4.87□□□□□ -1.63
CDX1P47902 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC4.87□□□□□ -1.63
CDX1P47902 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC4.87□□□□□ -1.63
CDX1P47902 AC008945.1-201ENST00000505144 499 ntBASIC4.87□□□□□ -1.63
CDX1P47902 AC090958.1-201ENST00000511122 351 ntBASIC4.87□□□□□ -1.63
CDX1P47902 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.87□□□□□ -1.63
CDX1P47902 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC4.87□□□□□ -1.63
CDX1P47902 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CDX1P47902 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.87□□□□□ -1.63
CDX1P47902 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC4.87□□□□□ -1.63
CDX1P47902 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.87□□□□□ -1.63
CDX1P47902 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC4.87□□□□□ -1.63
CDX1P47902 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC4.87□□□□□ -1.63
CDX1P47902 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC4.87□□□□□ -1.63
CDX1P47902 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.87□□□□□ -1.63
CDX1P47902 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC4.87□□□□□ -1.63
CDX1P47902 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC4.87□□□□□ -1.63
CDX1P47902 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC4.87□□□□□ -1.63
CDX1P47902 AC079315.1-201ENST00000602952 623 ntBASIC4.87□□□□□ -1.63
CDX1P47902 AC092474.3-201ENST00000603022 568 ntBASIC4.87□□□□□ -1.63
CDX1P47902 AC015849.2-201ENST00000605738 409 ntBASIC4.87□□□□□ -1.63
CDX1P47902 AP001437.1-201ENST00000608783 456 ntBASIC4.87□□□□□ -1.63
CDX1P47902 AL080312.2-201ENST00000613001 630 ntBASIC4.87□□□□□ -1.63
CDX1P47902 AC006840.1-201ENST00000623069 542 ntBASIC4.87□□□□□ -1.63
CDX1P47902 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CDX1P47902 AC073488.6-201ENST00000632293 754 ntBASIC4.87□□□□□ -1.63
CDX1P47902 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC4.87□□□□□ -1.63
CDX1P47902 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC4.87□□□□□ -1.63
CDX1P47902 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.87□□□□□ -1.63
CDX1P47902 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC4.87□□□□□ -1.63
CDX1P47902 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.87□□□□□ -1.63
CDX1P47902 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CDX1P47902 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CDX1P47902 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.87□□□□□ -1.63
CDX1P47902 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CDX1P47902 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CDX1P47902 AC024341.1-201ENST00000526444 1552 ntBASIC4.87□□□□□ -1.63
CDX1P47902 AC104260.2-201ENST00000623551 3497 ntBASIC4.87□□□□□ -1.63
CDX1P47902 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC4.87□□□□□ -1.63
CDX1P47902 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CDX1P47902 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC4.86□□□□□ -1.63
CDX1P47902 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.86□□□□□ -1.63
CDX1P47902 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
CDX1P47902 SMG1P7-201ENST00000565246 2704 ntBASIC4.86□□□□□ -1.63
CDX1P47902 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CDX1P47902 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CDX1P47902 RNA5SP433-201ENST00000364491 114 ntBASIC4.86□□□□□ -1.63
CDX1P47902 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CDX1P47902 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC4.86□□□□□ -1.63
CDX1P47902 OR51A6P-201ENST00000418680 1004 ntBASIC4.86□□□□□ -1.63
CDX1P47902 SETP10-201ENST00000424368 814 ntBASIC4.86□□□□□ -1.63
CDX1P47902 AL138899.2-201ENST00000439139 499 ntBASIC4.86□□□□□ -1.63
CDX1P47902 AC007000.2-201ENST00000442564 487 ntBASIC4.86□□□□□ -1.63
CDX1P47902 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC4.86□□□□□ -1.63
CDX1P47902 AC006326.1-201ENST00000445465 787 ntBASIC4.86□□□□□ -1.63
CDX1P47902 KRTAP2-5P-201ENST00000446109 396 ntBASIC4.86□□□□□ -1.63
CDX1P47902 AC097463.1-201ENST00000447288 481 ntBASIC4.86□□□□□ -1.63
CDX1P47902 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC4.86□□□□□ -1.63
CDX1P47902 AL133351.3-201ENST00000454998 193 ntBASIC4.86□□□□□ -1.63
CDX1P47902 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CDX1P47902 AC069304.1-201ENST00000491593 704 ntBASIC4.86□□□□□ -1.63
CDX1P47902 CDH12P2-201ENST00000504393 298 ntBASIC4.86□□□□□ -1.63
CDX1P47902 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CDX1P47902 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC4.86□□□□□ -1.63
CDX1P47902 IMPA1P1-201ENST00000510718 842 ntBASIC4.86□□□□□ -1.63
CDX1P47902 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC4.86□□□□□ -1.63
CDX1P47902 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC4.86□□□□□ -1.63
CDX1P47902 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.86□□□□□ -1.63
CDX1P47902 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.86□□□□□ -1.63
CDX1P47902 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CDX1P47902 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC4.86□□□□□ -1.63
CDX1P47902 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
CDX1P47902 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC4.86□□□□□ -1.63
CDX1P47902 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC4.86□□□□□ -1.63
CDX1P47902 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CDX1P47902 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.86□□□□□ -1.63
CDX1P47902 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC4.86□□□□□ -1.63
CDX1P47902 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CDX1P47902 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC4.86□□□□□ -1.63
CDX1P47902 MIR4701-201ENST00000583094 63 ntBASIC4.86□□□□□ -1.63
CDX1P47902 AP005136.2-201ENST00000583253 1049 ntBASIC4.86□□□□□ -1.63
CDX1P47902 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC4.86□□□□□ -1.63
CDX1P47902 AL499605.1-201ENST00000604628 403 ntBASIC4.86□□□□□ -1.63
CDX1P47902 AL450270.1-201ENST00000606160 391 ntBASIC4.86□□□□□ -1.63
CDX1P47902 AC092681.3-201ENST00000609463 678 ntBASIC4.86□□□□□ -1.63
CDX1P47902 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CDX1P47902 FAM27E2-201ENST00000619668 403 ntBASIC4.86□□□□□ -1.63
CDX1P47902 AC145207.9-201ENST00000623802 325 ntBASIC4.86□□□□□ -1.63
CDX1P47902 AC005618.4-201ENST00000625053 554 ntBASIC4.86□□□□□ -1.63
CDX1P47902 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
CDX1P47902 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CDX1P47902 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CDX1P47902 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.86□□□□□ -1.63
CDX1P47902 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms