Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL5A3P25940 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC6.62□□□□□ -1.35
COL5A3P25940 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.62□□□□□ -1.35
COL5A3P25940 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.62□□□□□ -1.35
COL5A3P25940 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.62□□□□□ -1.35
COL5A3P25940 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL5A3P25940 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC6.62□□□□□ -1.35
COL5A3P25940 PAX6-270ENST00000640368 6975 ntAPPRIS P4 TSL 5 BASIC6.62□□□□□ -1.35
COL5A3P25940 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.62□□□□□ -1.35
COL5A3P25940 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
COL5A3P25940 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC6.62□□□□□ -1.35
COL5A3P25940 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
COL5A3P25940 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC6.62□□□□□ -1.35
COL5A3P25940 NUDT19P3-201ENST00000404698 555 ntBASIC6.62□□□□□ -1.35
COL5A3P25940 RPS4XP9-201ENST00000405151 780 ntBASIC6.62□□□□□ -1.35
COL5A3P25940 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
COL5A3P25940 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC6.62□□□□□ -1.35
COL5A3P25940 AC063943.1-201ENST00000465434 453 ntBASIC6.62□□□□□ -1.35
COL5A3P25940 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.62□□□□□ -1.35
COL5A3P25940 GLUD1P3-202ENST00000508551 200 ntBASIC6.62□□□□□ -1.35
COL5A3P25940 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.62□□□□□ -1.35
COL5A3P25940 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.62□□□□□ -1.35
COL5A3P25940 AC009027.1-201ENST00000604510 479 ntBASIC6.62□□□□□ -1.35
COL5A3P25940 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL5A3P25940 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC6.61□□□□□ -1.35
COL5A3P25940 AC079777.1-201ENST00000623836 1953 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.61□□□□□ -1.35
COL5A3P25940 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A3P25940 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A3P25940 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A3P25940 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A3P25940 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
COL5A3P25940 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A3P25940 SPATA31C1-201ENST00000420021 3895 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A3P25940 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL5A3P25940 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.61□□□□□ -1.35
COL5A3P25940 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
COL5A3P25940 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
COL5A3P25940 SDAD1P1-202ENST00000524156 2051 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
COL5A3P25940 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
COL5A3P25940 HMGB3P7-201ENST00000400214 611 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 HSPA8P15-201ENST00000401676 786 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 CHEK2P3-201ENST00000416118 248 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC6.61□□□□□ -1.35
COL5A3P25940 BX323845.1-201ENST00000432417 179 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 AL512310.9-201ENST00000553311 948 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
COL5A3P25940 AC105129.1-201ENST00000560250 297 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 AC083809.1-201ENST00000615051 472 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
COL5A3P25940 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL5A3P25940 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.61□□□□□ -1.35
COL5A3P25940 AC144833.1-201ENST00000567953 4089 ntBASIC6.6□□□□□ -1.35
COL5A3P25940 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.6□□□□□ -1.35
COL5A3P25940 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A3P25940 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A3P25940 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COL5A3P25940 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A3P25940 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COL5A3P25940 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A3P25940 MIR600-201ENST00000385007 98 ntBASIC6.6□□□□□ -1.35
COL5A3P25940 AC069213.2-201ENST00000420238 366 ntBASIC6.6□□□□□ -1.35
COL5A3P25940 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A3P25940 NDUFA12P1-201ENST00000455914 406 ntBASIC6.6□□□□□ -1.35
COL5A3P25940 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.6□□□□□ -1.35
COL5A3P25940 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A3P25940 AC097173.1-201ENST00000505862 819 ntBASIC6.6□□□□□ -1.35
COL5A3P25940 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.6□□□□□ -1.35
COL5A3P25940 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.6□□□□□ -1.35
COL5A3P25940 AC091042.1-201ENST00000579213 173 ntBASIC6.6□□□□□ -1.35
COL5A3P25940 AC073869.10-201ENST00000642016 354 ntBASIC6.6□□□□□ -1.35
COL5A3P25940 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A3P25940 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A3P25940 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.6□□□□□ -1.35
COL5A3P25940 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A3P25940 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A3P25940 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A3P25940 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A3P25940 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A3P25940 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
COL5A3P25940 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.6□□□□□ -1.35
COL5A3P25940 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A3P25940 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL5A3P25940 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A3P25940 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A3P25940 API5-210ENST00000534600 1760 ntTSL 5 BASIC6.59□□□□□ -1.35
COL5A3P25940 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.59□□□□□ -1.35
COL5A3P25940 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC6.59□□□□□ -1.35
COL5A3P25940 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.59□□□□□ -1.35
COL5A3P25940 AC124944.2-201ENST00000429866 1242 ntBASIC6.59□□□□□ -1.35
COL5A3P25940 NOP56P2-201ENST00000447491 769 ntBASIC6.59□□□□□ -1.35
COL5A3P25940 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC6.59□□□□□ -1.35
COL5A3P25940 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.59□□□□□ -1.35
COL5A3P25940 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC6.59□□□□□ -1.35
COL5A3P25940 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
COL5A3P25940 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.59□□□□□ -1.35
COL5A3P25940 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC6.59□□□□□ -1.35
COL5A3P25940 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms