Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.82□□□□□ -1.64
USF1P22415 CBX1P3-201ENST00000413296 527 ntBASIC4.82□□□□□ -1.64
USF1P22415 AC009506.2-201ENST00000420635 840 ntBASIC4.82□□□□□ -1.64
USF1P22415 AC012075.1-201ENST00000436549 580 ntBASIC4.82□□□□□ -1.64
USF1P22415 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC4.82□□□□□ -1.64
USF1P22415 OSTCP1-201ENST00000455507 450 ntBASIC4.82□□□□□ -1.64
USF1P22415 LDHBP2-201ENST00000456969 1005 ntBASIC4.82□□□□□ -1.64
USF1P22415 RN7SL515P-201ENST00000463999 297 ntBASIC4.82□□□□□ -1.64
USF1P22415 RPL7P39-201ENST00000481157 744 ntBASIC4.82□□□□□ -1.64
USF1P22415 AC008410.1-201ENST00000483777 339 ntBASIC4.82□□□□□ -1.64
USF1P22415 RN7SL30P-201ENST00000488416 306 ntBASIC4.82□□□□□ -1.64
USF1P22415 TOMM22P4-201ENST00000511318 336 ntBASIC4.82□□□□□ -1.64
USF1P22415 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC4.82□□□□□ -1.64
USF1P22415 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC4.82□□□□□ -1.64
USF1P22415 MRPS16P1-201ENST00000523462 412 ntBASIC4.82□□□□□ -1.64
USF1P22415 OR10G5P-201ENST00000532733 358 ntBASIC4.82□□□□□ -1.64
USF1P22415 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
USF1P22415 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.82□□□□□ -1.64
USF1P22415 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 AC004825.1-201ENST00000555068 586 ntBASIC4.82□□□□□ -1.64
USF1P22415 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 DPPA2P4-201ENST00000563717 878 ntBASIC4.82□□□□□ -1.64
USF1P22415 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC4.82□□□□□ -1.64
USF1P22415 AC006115.2-201ENST00000596823 202 ntBASIC4.82□□□□□ -1.64
USF1P22415 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 OR51C1P-201ENST00000608504 942 ntBASIC4.82□□□□□ -1.64
USF1P22415 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC4.82□□□□□ -1.64
USF1P22415 AC007204.2-201ENST00000615022 616 ntBASIC4.82□□□□□ -1.64
USF1P22415 AL355974.3-201ENST00000617383 467 ntBASIC4.82□□□□□ -1.64
USF1P22415 MIR6837-201ENST00000620884 64 ntBASIC4.82□□□□□ -1.64
USF1P22415 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC4.82□□□□□ -1.64
USF1P22415 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.82□□□□□ -1.64
USF1P22415 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
USF1P22415 SRRM1P3-201ENST00000426911 2678 ntBASIC4.82□□□□□ -1.64
USF1P22415 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.82□□□□□ -1.64
USF1P22415 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USF1P22415 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC4.82□□□□□ -1.64
USF1P22415 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
USF1P22415 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.81□□□□□ -1.64
USF1P22415 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 AC005224.3-201ENST00000584683 2140 ntBASIC4.81□□□□□ -1.64
USF1P22415 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 MIR133A2-201ENST00000347538 102 ntBASIC4.81□□□□□ -1.64
USF1P22415 RNA5SP319-201ENST00000362768 119 ntBASIC4.81□□□□□ -1.64
USF1P22415 AC013268.2-201ENST00000420753 337 ntBASIC4.81□□□□□ -1.64
USF1P22415 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.81□□□□□ -1.64
USF1P22415 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 VTI1BP4-201ENST00000427516 527 ntBASIC4.81□□□□□ -1.64
USF1P22415 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.81□□□□□ -1.64
USF1P22415 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC4.81□□□□□ -1.64
USF1P22415 AC100832.1-201ENST00000471945 383 ntBASIC4.81□□□□□ -1.64
USF1P22415 AC017007.3-201ENST00000479865 435 ntBASIC4.81□□□□□ -1.64
USF1P22415 RPL32P33-201ENST00000487023 394 ntBASIC4.81□□□□□ -1.64
USF1P22415 AC009120.1-201ENST00000493458 473 ntBASIC4.81□□□□□ -1.64
USF1P22415 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC4.81□□□□□ -1.64
USF1P22415 OR5M14P-201ENST00000506803 618 ntBASIC4.81□□□□□ -1.64
USF1P22415 RN7SKP5-201ENST00000517045 272 ntBASIC4.81□□□□□ -1.64
USF1P22415 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC4.81□□□□□ -1.64
USF1P22415 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.81□□□□□ -1.64
USF1P22415 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC4.81□□□□□ -1.64
USF1P22415 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC4.81□□□□□ -1.64
USF1P22415 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC4.81□□□□□ -1.64
USF1P22415 AC044860.2-201ENST00000561005 179 ntBASIC4.81□□□□□ -1.64
USF1P22415 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC4.81□□□□□ -1.64
USF1P22415 AP001357.1-201ENST00000586304 1053 ntBASIC4.81□□□□□ -1.64
USF1P22415 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 IMMP1LP3-201ENST00000604197 224 ntBASIC4.81□□□□□ -1.64
USF1P22415 AC015849.6-201ENST00000605454 474 ntBASIC4.81□□□□□ -1.64
USF1P22415 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC4.81□□□□□ -1.64
USF1P22415 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
USF1P22415 CASC19-264ENST00000641912 1184 ntBASIC4.81□□□□□ -1.64
USF1P22415 SAMMSON-227ENST00000642114 1199 ntBASIC4.81□□□□□ -1.64
USF1P22415 CD86-204ENST00000469710 1604 ntTSL 2 BASIC4.81□□□□□ -1.64
USF1P22415 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 PROS2P-201ENST00000474651 1951 ntBASIC4.81□□□□□ -1.64
USF1P22415 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
USF1P22415 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
USF1P22415 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 AL590763.1-201ENST00000398297 1545 ntBASIC4.81□□□□□ -1.64
USF1P22415 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
USF1P22415 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
USF1P22415 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USF1P22415 AC010266.2-201ENST00000564741 3255 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms