Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 AL353807.1-201ENST00000427475 662 ntBASIC20.58■□□□□ 0.89
USP3Q9Y6I4 TUBB8P6-201ENST00000436895 1288 ntBASIC20.58■□□□□ 0.89
USP3Q9Y6I4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 C1QL1P1-201ENST00000568105 661 ntBASIC20.58■□□□□ 0.89
USP3Q9Y6I4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.58■□□□□ 0.89
USP3Q9Y6I4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP3Q9Y6I4 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP3Q9Y6I4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP3Q9Y6I4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 AL596275.1-201ENST00000423464 877 ntBASIC20.57■□□□□ 0.88
USP3Q9Y6I4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 AL049637.2-201ENST00000641778 930 ntBASIC20.57■□□□□ 0.88
USP3Q9Y6I4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.57■□□□□ 0.88
USP3Q9Y6I4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 AP001412.1-201ENST00000608405 714 ntBASIC20.56■□□□□ 0.88
USP3Q9Y6I4 AC113410.3-201ENST00000623366 203 ntBASIC20.56■□□□□ 0.88
USP3Q9Y6I4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.56■□□□□ 0.88
USP3Q9Y6I4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.55■□□□□ 0.88
USP3Q9Y6I4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP3Q9Y6I4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.54■□□□□ 0.88
USP3Q9Y6I4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
USP3Q9Y6I4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP3Q9Y6I4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
USP3Q9Y6I4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.53■□□□□ 0.88
USP3Q9Y6I4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms