Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 MIR718-201ENST00000390190 70 ntBASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A3BPQ9Y5P4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 Z99916.2-201ENST00000604037 246 ntBASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
COL4A3BPQ9Y5P4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 AL596275.1-201ENST00000423464 877 ntBASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A3BPQ9Y5P4 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 AC116351.2-201ENST00000606540 1585 ntBASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.94■■□□□ 1.1
COL4A3BPQ9Y5P4 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 NBPF21P-201ENST00000425093 1451 ntBASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.93■■□□□ 1.1
COL4A3BPQ9Y5P4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 AC018553.1-201ENST00000616682 1458 ntBASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.92■■□□□ 1.1
COL4A3BPQ9Y5P4 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms