Protein–RNA interactions for Protein: Q96NG5

ZNF558, Zinc finger protein 558, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558Q96NG5 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 KRT8P8-201ENST00000434750 1448 ntBASIC20.91■□□□□ 0.94
ZNF558Q96NG5 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF558Q96NG5 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 SLC25A1P2-201ENST00000430693 912 ntBASIC20.9■□□□□ 0.94
ZNF558Q96NG5 AC091390.4-202ENST00000476426 537 ntBASIC20.9■□□□□ 0.94
ZNF558Q96NG5 AC022616.7-201ENST00000525383 220 ntBASIC20.9■□□□□ 0.94
ZNF558Q96NG5 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 PKD1P6-201ENST00000343738 4769 ntBASIC20.9■□□□□ 0.94
ZNF558Q96NG5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF558Q96NG5 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ZNF558Q96NG5 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 Z85996.1-201ENST00000494644 937 ntBASIC20.89■□□□□ 0.93
ZNF558Q96NG5 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF558Q96NG5 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 AC117947.1-201ENST00000427448 529 ntBASIC20.88■□□□□ 0.93
ZNF558Q96NG5 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 AC063952.2-201ENST00000498792 1227 ntBASIC20.88■□□□□ 0.93
ZNF558Q96NG5 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 BX119927.1-201ENST00000636596 1552 ntBASIC20.88■□□□□ 0.93
ZNF558Q96NG5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF558Q96NG5 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF558Q96NG5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF558Q96NG5 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
ZNF558Q96NG5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms