Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHFRQ96EP1 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHFRQ96EP1 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.02■□□□□ 0.8
CHFRQ96EP1 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.02■□□□□ 0.8
CHFRQ96EP1 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.02■□□□□ 0.8
CHFRQ96EP1 SLC25A1P4-201ENST00000567977 778 ntBASIC20.02■□□□□ 0.8
CHFRQ96EP1 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.02■□□□□ 0.8
CHFRQ96EP1 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.02■□□□□ 0.8
CHFRQ96EP1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHFRQ96EP1 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.02■□□□□ 0.8
CHFRQ96EP1 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHFRQ96EP1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CHFRQ96EP1 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
CHFRQ96EP1 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.02■□□□□ 0.79
CHFRQ96EP1 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHFRQ96EP1 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHFRQ96EP1 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHFRQ96EP1 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHFRQ96EP1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 LIN28AP1-201ENST00000429574 405 ntBASIC20.01■□□□□ 0.79
CHFRQ96EP1 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHFRQ96EP1 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHFRQ96EP1 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CHFRQ96EP1 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHFRQ96EP1 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CHFRQ96EP1 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.01■□□□□ 0.79
CHFRQ96EP1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHFRQ96EP1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20■□□□□ 0.79
CHFRQ96EP1 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20■□□□□ 0.79
CHFRQ96EP1 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20■□□□□ 0.79
CHFRQ96EP1 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20■□□□□ 0.79
CHFRQ96EP1 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 ATP5G1P1-201ENST00000448724 379 ntBASIC20■□□□□ 0.79
CHFRQ96EP1 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20■□□□□ 0.79
CHFRQ96EP1 AC011298.2-201ENST00000617989 482 ntBASIC20■□□□□ 0.79
CHFRQ96EP1 TMEM179-206ENST00000616017 1645 ntBASIC20■□□□□ 0.79
CHFRQ96EP1 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20■□□□□ 0.79
CHFRQ96EP1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20■□□□□ 0.79
CHFRQ96EP1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20■□□□□ 0.79
CHFRQ96EP1 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20■□□□□ 0.79
CHFRQ96EP1 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.99■□□□□ 0.79
CHFRQ96EP1 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.99■□□□□ 0.79
CHFRQ96EP1 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CHFRQ96EP1 AC096733.2-201ENST00000609937 1394 ntBASIC19.99■□□□□ 0.79
CHFRQ96EP1 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.99■□□□□ 0.79
CHFRQ96EP1 Z85996.1-201ENST00000494644 937 ntBASIC19.99■□□□□ 0.79
CHFRQ96EP1 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.99■□□□□ 0.79
CHFRQ96EP1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 AC007375.3-201ENST00000600936 2314 ntBASIC19.99■□□□□ 0.79
CHFRQ96EP1 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.99■□□□□ 0.79
CHFRQ96EP1 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.99■□□□□ 0.79
CHFRQ96EP1 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CHFRQ96EP1 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHFRQ96EP1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
CHFRQ96EP1 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHFRQ96EP1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHFRQ96EP1 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHFRQ96EP1 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CHFRQ96EP1 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.98■□□□□ 0.79
CHFRQ96EP1 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHFRQ96EP1 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHFRQ96EP1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHFRQ96EP1 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHFRQ96EP1 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.98■□□□□ 0.79
CHFRQ96EP1 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHFRQ96EP1 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.98■□□□□ 0.79
CHFRQ96EP1 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHFRQ96EP1 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms