Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP4Q8N3C7 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.35■□□□□ 0.53
CLIP4Q8N3C7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.35■□□□□ 0.53
CLIP4Q8N3C7 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP4Q8N3C7 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP4Q8N3C7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 AC120498.9-201ENST00000339021 3867 ntBASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 AL137784.2-201ENST00000607332 1000 ntBASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP4Q8N3C7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 KRT16P6-202ENST00000425692 1426 ntBASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 AC005082.1-201ENST00000413042 2259 ntBASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.33■□□□□ 0.53
CLIP4Q8N3C7 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.33■□□□□ 0.52
CLIP4Q8N3C7 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 RAP2CP1-201ENST00000605103 478 ntBASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 TREX1-205ENST00000625293 1783 ntBASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP4Q8N3C7 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 AC009237.14-201ENST00000609975 1594 ntBASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 AC026185.1-201ENST00000445748 174 ntBASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 AC105036.2-201ENST00000569468 176 ntBASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.31■□□□□ 0.52
CLIP4Q8N3C7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms