Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PRKDCP78527 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.29□□□□□ -0.12
PRKDCP78527 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.29□□□□□ -0.12
PRKDCP78527 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PRKDCP78527 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PRKDCP78527 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC14.29□□□□□ -0.12
PRKDCP78527 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PRKDCP78527 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC14.28□□□□□ -0.12
PRKDCP78527 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC14.28□□□□□ -0.12
PRKDCP78527 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
PRKDCP78527 AC079776.4-201ENST00000511039 504 ntBASIC14.28□□□□□ -0.12
PRKDCP78527 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC14.28□□□□□ -0.12
PRKDCP78527 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.28□□□□□ -0.12
PRKDCP78527 NT5C-210ENST00000582160 860 ntTSL 2 BASIC14.28□□□□□ -0.12
PRKDCP78527 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 AP006587.1-201ENST00000534129 1502 ntBASIC14.28□□□□□ -0.12
PRKDCP78527 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.28□□□□□ -0.12
PRKDCP78527 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
PRKDCP78527 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.28□□□□□ -0.12
PRKDCP78527 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
PRKDCP78527 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.28□□□□□ -0.12
PRKDCP78527 AC091304.2-201ENST00000564639 760 ntBASIC14.28□□□□□ -0.12
PRKDCP78527 AL139424.1-201ENST00000607572 797 ntBASIC14.28□□□□□ -0.12
PRKDCP78527 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
PRKDCP78527 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 AC011484.1-201ENST00000377652 1995 ntBASIC14.28□□□□□ -0.12
PRKDCP78527 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
PRKDCP78527 MIR564-202ENST00000385049 94 ntBASIC14.28□□□□□ -0.12
PRKDCP78527 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
PRKDCP78527 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.28□□□□□ -0.12
PRKDCP78527 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC14.28□□□□□ -0.12
PRKDCP78527 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PRKDCP78527 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PRKDCP78527 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PRKDCP78527 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PRKDCP78527 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PRKDCP78527 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PRKDCP78527 TPSP2-201ENST00000561760 610 ntBASIC14.27□□□□□ -0.12
PRKDCP78527 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PRKDCP78527 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PRKDCP78527 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC14.27□□□□□ -0.12
PRKDCP78527 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PRKDCP78527 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
PRKDCP78527 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PRKDCP78527 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
PRKDCP78527 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC14.27□□□□□ -0.12
PRKDCP78527 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
PRKDCP78527 AL590627.1-203ENST00000421194 1026 ntBASIC14.27□□□□□ -0.12
PRKDCP78527 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC14.27□□□□□ -0.13
PRKDCP78527 PTPA-216ENST00000432651 857 ntTSL 2 BASIC14.27□□□□□ -0.13
PRKDCP78527 TSSC2-201ENST00000450217 709 ntBASIC14.27□□□□□ -0.13
PRKDCP78527 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
PRKDCP78527 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PRKDCP78527 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
PRKDCP78527 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PRKDCP78527 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PRKDCP78527 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PRKDCP78527 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC14.26□□□□□ -0.13
PRKDCP78527 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC14.26□□□□□ -0.13
PRKDCP78527 LINC00167-201ENST00000530583 1419 ntBASIC14.26□□□□□ -0.13
PRKDCP78527 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
PRKDCP78527 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC14.26□□□□□ -0.13
PRKDCP78527 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 GOLGA6L3-201ENST00000507199 1679 ntBASIC14.26□□□□□ -0.13
PRKDCP78527 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC14.26□□□□□ -0.13
PRKDCP78527 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PRKDCP78527 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC14.26□□□□□ -0.13
PRKDCP78527 CALM3-202ENST00000391918 702 ntTSL 2 BASIC14.26□□□□□ -0.13
PRKDCP78527 POLD2P1-201ENST00000511220 997 ntBASIC14.26□□□□□ -0.13
PRKDCP78527 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
PRKDCP78527 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
PRKDCP78527 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC14.25□□□□□ -0.13
PRKDCP78527 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PRKDCP78527 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
PRKDCP78527 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms