Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.18■□□□□ 0.34
COL8A1P27658 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC17.17■□□□□ 0.34
COL8A1P27658 GUSBP5-202ENST00000510805 1989 ntBASIC17.17■□□□□ 0.34
COL8A1P27658 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.17■□□□□ 0.34
COL8A1P27658 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
COL8A1P27658 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.17■□□□□ 0.34
COL8A1P27658 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.17■□□□□ 0.34
COL8A1P27658 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL8A1P27658 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL8A1P27658 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL8A1P27658 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL8A1P27658 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL8A1P27658 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.17■□□□□ 0.34
COL8A1P27658 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.17■□□□□ 0.34
COL8A1P27658 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.17■□□□□ 0.34
COL8A1P27658 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.17■□□□□ 0.34
COL8A1P27658 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.17■□□□□ 0.34
COL8A1P27658 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL8A1P27658 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.17■□□□□ 0.34
COL8A1P27658 AP000692.2-201ENST00000608391 879 ntBASIC17.17■□□□□ 0.34
COL8A1P27658 AC127496.7-201ENST00000625110 1798 ntBASIC17.17■□□□□ 0.34
COL8A1P27658 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.17■□□□□ 0.34
COL8A1P27658 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
COL8A1P27658 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL8A1P27658 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL8A1P27658 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
COL8A1P27658 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.16■□□□□ 0.34
COL8A1P27658 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
COL8A1P27658 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 KRT8P10-201ENST00000450021 1447 ntBASIC17.16■□□□□ 0.34
COL8A1P27658 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
COL8A1P27658 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.16■□□□□ 0.34
COL8A1P27658 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.16■□□□□ 0.34
COL8A1P27658 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.16■□□□□ 0.34
COL8A1P27658 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.16■□□□□ 0.34
COL8A1P27658 PRSS44-201ENST00000515154 1146 ntBASIC17.16■□□□□ 0.34
COL8A1P27658 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.16■□□□□ 0.34
COL8A1P27658 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
COL8A1P27658 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.16■□□□□ 0.34
COL8A1P27658 CR769767.2-201ENST00000622735 460 ntBASIC17.16■□□□□ 0.34
COL8A1P27658 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
COL8A1P27658 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
COL8A1P27658 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
COL8A1P27658 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
COL8A1P27658 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL8A1P27658 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.15■□□□□ 0.34
COL8A1P27658 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL8A1P27658 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.15■□□□□ 0.34
COL8A1P27658 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL8A1P27658 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
COL8A1P27658 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.15■□□□□ 0.34
COL8A1P27658 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL8A1P27658 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.15■□□□□ 0.34
COL8A1P27658 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL8A1P27658 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.15■□□□□ 0.34
COL8A1P27658 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL8A1P27658 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.15■□□□□ 0.34
COL8A1P27658 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL8A1P27658 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.15■□□□□ 0.34
COL8A1P27658 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL8A1P27658 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL8A1P27658 AC092119.3-201ENST00000612618 583 ntBASIC17.15■□□□□ 0.34
COL8A1P27658 AC011298.2-201ENST00000617989 482 ntBASIC17.15■□□□□ 0.34
COL8A1P27658 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL8A1P27658 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.15■□□□□ 0.34
COL8A1P27658 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL8A1P27658 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.15■□□□□ 0.34
COL8A1P27658 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL8A1P27658 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
COL8A1P27658 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC17.15■□□□□ 0.34
COL8A1P27658 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.14■□□□□ 0.33
COL8A1P27658 KRT8P45-201ENST00000414328 1447 ntBASIC17.14■□□□□ 0.33
COL8A1P27658 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.14■□□□□ 0.33
COL8A1P27658 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.14■□□□□ 0.33
COL8A1P27658 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
COL8A1P27658 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
COL8A1P27658 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
COL8A1P27658 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.14■□□□□ 0.33
COL8A1P27658 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.14■□□□□ 0.33
COL8A1P27658 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL8A1P27658 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms