Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VCANP13611 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
VCANP13611 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
VCANP13611 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.4■□□□□ 0.86
VCANP13611 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 AC140113.3-201ENST00000605663 199 ntBASIC20.4■□□□□ 0.86
VCANP13611 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.4■□□□□ 0.86
VCANP13611 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 AC016734.2-201ENST00000624325 1377 ntBASIC20.4■□□□□ 0.86
VCANP13611 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
VCANP13611 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.4■□□□□ 0.86
VCANP13611 TSPY17P-201ENST00000450329 467 ntBASIC20.4■□□□□ 0.86
VCANP13611 KRT16P4-201ENST00000453883 522 ntBASIC20.4■□□□□ 0.86
VCANP13611 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VCANP13611 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
VCANP13611 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
VCANP13611 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.4■□□□□ 0.86
VCANP13611 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.4■□□□□ 0.86
VCANP13611 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCANP13611 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.4■□□□□ 0.86
VCANP13611 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VCANP13611 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VCANP13611 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
VCANP13611 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.39■□□□□ 0.86
VCANP13611 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.39■□□□□ 0.86
VCANP13611 C1QL1P1-201ENST00000568105 661 ntBASIC20.39■□□□□ 0.86
VCANP13611 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VCANP13611 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCANP13611 KRT18P58-201ENST00000527480 1120 ntBASIC20.39■□□□□ 0.85
VCANP13611 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
VCANP13611 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCANP13611 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VCANP13611 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.39■□□□□ 0.85
VCANP13611 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.39■□□□□ 0.85
VCANP13611 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.38■□□□□ 0.85
VCANP13611 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCANP13611 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.38■□□□□ 0.85
VCANP13611 AC091304.2-201ENST00000564639 760 ntBASIC20.38■□□□□ 0.85
VCANP13611 AL353719.1-201ENST00000566847 864 ntBASIC20.38■□□□□ 0.85
VCANP13611 AC140113.2-201ENST00000604370 208 ntBASIC20.38■□□□□ 0.85
VCANP13611 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.38■□□□□ 0.85
VCANP13611 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
VCANP13611 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
VCANP13611 LINC01311-201ENST00000565162 1445 ntBASIC20.38■□□□□ 0.85
VCANP13611 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.38■□□□□ 0.85
VCANP13611 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCANP13611 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCANP13611 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCANP13611 AL121912.1-201ENST00000603683 238 ntBASIC20.38■□□□□ 0.85
VCANP13611 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCANP13611 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
VCANP13611 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCANP13611 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCANP13611 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCANP13611 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCANP13611 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.38■□□□□ 0.85
VCANP13611 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.38■□□□□ 0.85
VCANP13611 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.38■□□□□ 0.85
VCANP13611 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.38■□□□□ 0.85
VCANP13611 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCANP13611 AC080038.3-201ENST00000623346 1952 ntBASIC20.38■□□□□ 0.85
VCANP13611 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.38■□□□□ 0.85
VCANP13611 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.38■□□□□ 0.85
VCANP13611 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.38■□□□□ 0.85
VCANP13611 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCANP13611 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.37■□□□□ 0.85
VCANP13611 HLA-J-203ENST00000494367 1087 ntBASIC20.37■□□□□ 0.85
VCANP13611 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.37■□□□□ 0.85
VCANP13611 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VCANP13611 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
VCANP13611 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.37■□□□□ 0.85
VCANP13611 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
VCANP13611 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.37■□□□□ 0.85
VCANP13611 PTBP1P-201ENST00000554374 1601 ntBASIC20.37■□□□□ 0.85
VCANP13611 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.37■□□□□ 0.85
VCANP13611 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.37■□□□□ 0.85
VCANP13611 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.37■□□□□ 0.85
VCANP13611 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.37■□□□□ 0.85
VCANP13611 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCANP13611 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCANP13611 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCANP13611 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
VCANP13611 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCANP13611 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
VCANP13611 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.36■□□□□ 0.85
VCANP13611 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.36■□□□□ 0.85
VCANP13611 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
VCANP13611 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
VCANP13611 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms