Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC11O43248 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC11O43248 RN7SL850P-201ENST00000579959 291 ntBASIC20.03■□□□□ 0.8
HOXC11O43248 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC11O43248 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
HOXC11O43248 AC092865.7-201ENST00000641832 219 ntBASIC20.03■□□□□ 0.8
HOXC11O43248 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.03■□□□□ 0.8
HOXC11O43248 AL137060.1-201ENST00000618151 2648 ntBASIC20.03■□□□□ 0.8
HOXC11O43248 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.02■□□□□ 0.8
HOXC11O43248 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC11O43248 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.02■□□□□ 0.8
HOXC11O43248 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC11O43248 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HOXC11O43248 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HOXC11O43248 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC11O43248 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC11O43248 AC113347.1-201ENST00000413321 391 ntBASIC20.02■□□□□ 0.8
HOXC11O43248 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.02■□□□□ 0.8
HOXC11O43248 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HOXC11O43248 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.02■□□□□ 0.8
HOXC11O43248 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.02■□□□□ 0.8
HOXC11O43248 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.02■□□□□ 0.8
HOXC11O43248 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC11O43248 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.02■□□□□ 0.8
HOXC11O43248 AC130371.2-201ENST00000619443 611 ntBASIC20.02■□□□□ 0.8
HOXC11O43248 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.02■□□□□ 0.8
HOXC11O43248 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC11O43248 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC11O43248 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC11O43248 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC11O43248 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC11O43248 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
HOXC11O43248 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HOXC11O43248 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HOXC11O43248 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
HOXC11O43248 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC11O43248 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC11O43248 RCC2P6-201ENST00000526625 1557 ntBASIC20.01■□□□□ 0.79
HOXC11O43248 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC11O43248 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC11O43248 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC11O43248 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC11O43248 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.01■□□□□ 0.79
HOXC11O43248 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC11O43248 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC11O43248 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.01■□□□□ 0.79
HOXC11O43248 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC11O43248 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC11O43248 AP000692.2-201ENST00000608391 879 ntBASIC20.01■□□□□ 0.79
HOXC11O43248 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC11O43248 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC11O43248 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC11O43248 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC11O43248 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC11O43248 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20■□□□□ 0.79
HOXC11O43248 AC092667.1-201ENST00000434301 2586 ntBASIC20■□□□□ 0.79
HOXC11O43248 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20■□□□□ 0.79
HOXC11O43248 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20■□□□□ 0.79
HOXC11O43248 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC11O43248 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20■□□□□ 0.79
HOXC11O43248 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20■□□□□ 0.79
HOXC11O43248 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20■□□□□ 0.79
HOXC11O43248 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20■□□□□ 0.79
HOXC11O43248 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20■□□□□ 0.79
HOXC11O43248 AC097488.1-201ENST00000507834 756 ntBASIC20■□□□□ 0.79
HOXC11O43248 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20■□□□□ 0.79
HOXC11O43248 C2orf69P3-201ENST00000565542 1120 ntBASIC20■□□□□ 0.79
HOXC11O43248 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20■□□□□ 0.79
HOXC11O43248 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC11O43248 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20■□□□□ 0.79
HOXC11O43248 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20■□□□□ 0.79
HOXC11O43248 AC073314.1-201ENST00000568729 2216 ntBASIC20■□□□□ 0.79
HOXC11O43248 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20■□□□□ 0.79
HOXC11O43248 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HOXC11O43248 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC11O43248 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC11O43248 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HOXC11O43248 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HOXC11O43248 AP005212.1-201ENST00000581547 1997 ntBASIC19.99■□□□□ 0.79
HOXC11O43248 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.99■□□□□ 0.79
HOXC11O43248 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC11O43248 AC005521.1-201ENST00000393351 872 ntBASIC19.99■□□□□ 0.79
HOXC11O43248 AC004951.3-201ENST00000418645 1148 ntBASIC19.99■□□□□ 0.79
HOXC11O43248 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HOXC11O43248 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.99■□□□□ 0.79
HOXC11O43248 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
HOXC11O43248 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.99■□□□□ 0.79
HOXC11O43248 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.99■□□□□ 0.79
HOXC11O43248 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC11O43248 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC11O43248 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
HOXC11O43248 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms