Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 C1QL1P1-201ENST00000568105 661 ntBASIC22.12■■□□□ 1.13
MSH4O15457 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC22.12■■□□□ 1.13
MSH4O15457 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC22.12■■□□□ 1.13
MSH4O15457 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC22.12■■□□□ 1.13
MSH4O15457 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC22.11■■□□□ 1.13
MSH4O15457 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH4O15457 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
MSH4O15457 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
MSH4O15457 AL596275.1-201ENST00000423464 877 ntBASIC22.11■■□□□ 1.13
MSH4O15457 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC22.11■■□□□ 1.13
MSH4O15457 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
MSH4O15457 FDX2-207ENST00000494368 584 ntTSL 4 BASIC22.11■■□□□ 1.13
MSH4O15457 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.11■■□□□ 1.13
MSH4O15457 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC22.11■■□□□ 1.13
MSH4O15457 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC22.11■■□□□ 1.13
MSH4O15457 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH4O15457 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH4O15457 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH4O15457 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.11■■□□□ 1.13
MSH4O15457 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC22.11■■□□□ 1.13
MSH4O15457 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
MSH4O15457 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH4O15457 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH4O15457 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
MSH4O15457 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH4O15457 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH4O15457 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC22.1■■□□□ 1.13
MSH4O15457 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH4O15457 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH4O15457 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC22.1■■□□□ 1.13
MSH4O15457 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
MSH4O15457 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
MSH4O15457 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC22.1■■□□□ 1.13
MSH4O15457 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC22.1■■□□□ 1.13
MSH4O15457 AL049637.2-201ENST00000641778 930 ntBASIC22.1■■□□□ 1.13
MSH4O15457 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
MSH4O15457 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
MSH4O15457 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
MSH4O15457 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC22.09■■□□□ 1.13
MSH4O15457 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
MSH4O15457 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.09■■□□□ 1.13
MSH4O15457 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH4O15457 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH4O15457 SAPCD2P4-201ENST00000424595 1171 ntBASIC22.09■■□□□ 1.13
MSH4O15457 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
MSH4O15457 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC22.09■■□□□ 1.13
MSH4O15457 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH4O15457 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC22.09■■□□□ 1.13
MSH4O15457 AL353708.3-201ENST00000610272 989 ntBASIC22.09■■□□□ 1.13
MSH4O15457 AC113410.3-201ENST00000623366 203 ntBASIC22.09■■□□□ 1.13
MSH4O15457 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.09■■□□□ 1.13
MSH4O15457 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
MSH4O15457 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH4O15457 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC22.09■■□□□ 1.13
MSH4O15457 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC22.09■■□□□ 1.13
MSH4O15457 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH4O15457 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC22.09■■□□□ 1.13
MSH4O15457 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC22.08■■□□□ 1.13
MSH4O15457 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC22.08■■□□□ 1.13
MSH4O15457 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
MSH4O15457 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
MSH4O15457 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
MSH4O15457 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
MSH4O15457 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC22.08■■□□□ 1.13
MSH4O15457 AL353807.1-201ENST00000427475 662 ntBASIC22.08■■□□□ 1.13
MSH4O15457 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC22.08■■□□□ 1.13
MSH4O15457 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC22.08■■□□□ 1.13
MSH4O15457 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
MSH4O15457 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC22.08■■□□□ 1.13
MSH4O15457 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
MSH4O15457 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
MSH4O15457 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC22.08■■□□□ 1.12
MSH4O15457 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH4O15457 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH4O15457 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH4O15457 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH4O15457 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH4O15457 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH4O15457 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.07■■□□□ 1.12
MSH4O15457 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.07■■□□□ 1.12
MSH4O15457 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
MSH4O15457 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH4O15457 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
MSH4O15457 RPS15-203ENST00000586096 570 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH4O15457 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH4O15457 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH4O15457 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH4O15457 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH4O15457 AC125437.2-201ENST00000625180 2167 ntBASIC22.06■■□□□ 1.12
MSH4O15457 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH4O15457 KRT8P8-201ENST00000434750 1448 ntBASIC22.06■■□□□ 1.12
MSH4O15457 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
MSH4O15457 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH4O15457 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
MSH4O15457 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH4O15457 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms