Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 CREM-238ENST00000488741 651 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 AC127381.1-201ENST00000555979 939 ntBASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 AC092332.1-201ENST00000563684 829 ntBASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 MIR4260-201ENST00000583107 67 ntBASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 MIR3936-201ENST00000584304 110 ntBASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 AC092266.1-201ENST00000610958 165 ntBASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC112Q8NEF3 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC6.09□□□□□ -1.44
CCDC112Q8NEF3 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.09□□□□□ -1.44
CCDC112Q8NEF3 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
CCDC112Q8NEF3 Z83820.1-201ENST00000456978 1499 ntBASIC6.09□□□□□ -1.44
CCDC112Q8NEF3 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 TRIM51GP-201ENST00000534741 1350 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 RN7SKP74-201ENST00000362849 309 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 COX5BP7-201ENST00000414780 274 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 PPIAP27-201ENST00000453800 265 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC073610.1-201ENST00000489971 396 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AP003396.4-201ENST00000527574 265 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 CYCSP38-201ENST00000559840 322 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC007346.1-201ENST00000569208 867 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 MIR4311-201ENST00000580794 100 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AP005119.1-201ENST00000580956 292 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 MIR4433B-201ENST00000581329 102 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 PRPF19P1-201ENST00000584766 898 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC068768.2-201ENST00000602352 343 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC139426.3-201ENST00000605648 2059 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 AC008627.1-201ENST00000517511 1704 ntBASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC112Q8NEF3 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 AC114947.2-201ENST00000565748 2125 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 AC022417.1-201ENST00000624768 1303 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 OR1L6-202ENST00000373684 1044 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 RPL21P67-201ENST00000402896 478 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 RN7SKP29-201ENST00000410957 272 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 GNG5P5-201ENST00000420444 220 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 RPL19P16-201ENST00000433839 588 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 AC093166.4-201ENST00000457867 318 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 RN7SL72P-201ENST00000460697 269 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 AC023194.2-201ENST00000465398 406 ntBASIC6.07□□□□□ -1.44
CCDC112Q8NEF3 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 163.2 ms