Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC6.09□□□□□ -1.43
USP41Q3LFD5 MIR8080-201ENST00000622224 89 ntBASIC6.09□□□□□ -1.43
USP41Q3LFD5 MIR6719-201ENST00000622428 87 ntBASIC6.09□□□□□ -1.43
USP41Q3LFD5 CCT5-215ENST00000625723 135 ntTSL 5 BASIC6.09□□□□□ -1.43
USP41Q3LFD5 AC004808.2-201ENST00000627965 773 ntBASIC6.09□□□□□ -1.43
USP41Q3LFD5 WDR75-207ENST00000631047 270 ntTSL 5 BASIC6.09□□□□□ -1.43
USP41Q3LFD5 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.09□□□□□ -1.43
USP41Q3LFD5 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
USP41Q3LFD5 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
USP41Q3LFD5 CASC19-260ENST00000641828 2001 ntBASIC6.09□□□□□ -1.43
USP41Q3LFD5 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC6.09□□□□□ -1.43
USP41Q3LFD5 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP41Q3LFD5 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
USP41Q3LFD5 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.09□□□□□ -1.43
USP41Q3LFD5 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.09□□□□□ -1.43
USP41Q3LFD5 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USP41Q3LFD5 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.09□□□□□ -1.44
USP41Q3LFD5 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
USP41Q3LFD5 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.44
USP41Q3LFD5 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
USP41Q3LFD5 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
USP41Q3LFD5 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
USP41Q3LFD5 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
USP41Q3LFD5 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.44
USP41Q3LFD5 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 EEF1A1P30-201ENST00000429708 1315 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 RNA5SP319-201ENST00000362768 119 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 U3.7-201ENST00000363668 216 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 MIR1286-201ENST00000408112 78 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 NENFP1-201ENST00000419476 466 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AL365220.1-201ENST00000432923 399 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC073072.2-201ENST00000447425 348 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AL450023.1-201ENST00000450868 751 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 MTND2P3-201ENST00000452458 470 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 TPRKBP1-201ENST00000456243 481 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC011225.1-201ENST00000457751 369 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AL445687.2-201ENST00000458156 728 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 COPS8P2-201ENST00000473228 627 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 RN7SL799P-201ENST00000475891 298 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 MAL2-207ENST00000522828 603 ntTSL 3 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 MTND2P17-201ENST00000550281 688 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 FKBP1AP1-201ENST00000594588 318 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC119501.1-201ENST00000603646 475 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 KATNBL1P1-201ENST00000605192 748 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC007620.3-201ENST00000608131 497 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC211433.2-201ENST00000608433 387 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AL359513.1-201ENST00000614364 557 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC003001.2-201ENST00000616294 831 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AC005840.5-201ENST00000619166 599 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 MIR6837-201ENST00000620884 64 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 AL132656.3-201ENST00000606384 1595 ntBASIC6.08□□□□□ -1.44
USP41Q3LFD5 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USP41Q3LFD5 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.08□□□□□ -1.44
USP41Q3LFD5 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP41Q3LFD5 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP41Q3LFD5 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USP41Q3LFD5 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
USP41Q3LFD5 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms