Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.21□□□□□ -1.58
LIM2P55344 AC093524.1-201ENST00000564266 1094 ntBASIC5.21□□□□□ -1.58
LIM2P55344 AC015720.2-201ENST00000567709 334 ntBASIC5.21□□□□□ -1.58
LIM2P55344 SNORD95-201ENST00000579879 68 ntBASIC5.21□□□□□ -1.58
LIM2P55344 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.21□□□□□ -1.58
LIM2P55344 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 AC018690.1-201ENST00000608144 626 ntBASIC5.21□□□□□ -1.58
LIM2P55344 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.21□□□□□ -1.58
LIM2P55344 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
LIM2P55344 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
LIM2P55344 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.21□□□□□ -1.58
LIM2P55344 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 MIPEPP2-201ENST00000422560 1819 ntBASIC5.2□□□□□ -1.58
LIM2P55344 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.2□□□□□ -1.58
LIM2P55344 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.2□□□□□ -1.58
LIM2P55344 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
LIM2P55344 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
LIM2P55344 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 AC092681.1-201ENST00000297369 291 ntBASIC5.2□□□□□ -1.58
LIM2P55344 RN7SKP124-201ENST00000364730 341 ntBASIC5.2□□□□□ -1.58
LIM2P55344 AL391422.1-201ENST00000402155 436 ntBASIC5.2□□□□□ -1.58
LIM2P55344 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.2□□□□□ -1.58
LIM2P55344 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.2□□□□□ -1.58
LIM2P55344 NDUFB4P8-201ENST00000435351 367 ntBASIC5.2□□□□□ -1.58
LIM2P55344 AC012075.1-201ENST00000436549 580 ntBASIC5.2□□□□□ -1.58
LIM2P55344 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.2□□□□□ -1.58
LIM2P55344 RPSAP39-201ENST00000467439 883 ntBASIC5.2□□□□□ -1.58
LIM2P55344 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.2□□□□□ -1.58
LIM2P55344 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.2□□□□□ -1.58
LIM2P55344 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.2□□□□□ -1.58
LIM2P55344 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
LIM2P55344 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.2□□□□□ -1.58
LIM2P55344 AP005403.1-201ENST00000579720 229 ntBASIC5.2□□□□□ -1.58
LIM2P55344 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
LIM2P55344 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.2□□□□□ -1.58
LIM2P55344 AL139124.1-201ENST00000609123 421 ntBASIC5.2□□□□□ -1.58
LIM2P55344 AC010632.3-201ENST00000611377 369 ntBASIC5.2□□□□□ -1.58
LIM2P55344 AC004477.3-201ENST00000614061 590 ntBASIC5.2□□□□□ -1.58
LIM2P55344 AL162574.1-201ENST00000615702 950 ntBASIC5.2□□□□□ -1.58
LIM2P55344 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 AL132656.3-201ENST00000606384 1595 ntBASIC5.2□□□□□ -1.58
LIM2P55344 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.2□□□□□ -1.58
LIM2P55344 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIM2P55344 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
LIM2P55344 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.19□□□□□ -1.58
LIM2P55344 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.19□□□□□ -1.58
LIM2P55344 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
LIM2P55344 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.19□□□□□ -1.58
LIM2P55344 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.19□□□□□ -1.58
LIM2P55344 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIM2P55344 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
LIM2P55344 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIM2P55344 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
LIM2P55344 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LIM2P55344 RNA5SP242-201ENST00000364171 118 ntBASIC5.19□□□□□ -1.58
LIM2P55344 GPS2P1-201ENST00000411761 986 ntBASIC5.19□□□□□ -1.58
LIM2P55344 GABARAPL3-201ENST00000412799 354 ntBASIC5.19□□□□□ -1.58
LIM2P55344 Z93019.1-201ENST00000416450 973 ntBASIC5.19□□□□□ -1.58
LIM2P55344 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.19□□□□□ -1.58
LIM2P55344 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.19□□□□□ -1.58
LIM2P55344 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.19□□□□□ -1.58
LIM2P55344 AC073465.2-201ENST00000440938 498 ntBASIC5.19□□□□□ -1.58
LIM2P55344 AL391987.1-201ENST00000441025 200 ntBASIC5.19□□□□□ -1.58
LIM2P55344 AC016724.1-201ENST00000453215 421 ntBASIC5.19□□□□□ -1.58
LIM2P55344 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.19□□□□□ -1.58
LIM2P55344 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.19□□□□□ -1.58
LIM2P55344 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.19□□□□□ -1.58
LIM2P55344 AC021106.1-201ENST00000509020 1058 ntBASIC5.19□□□□□ -1.58
LIM2P55344 RN7SKP99-201ENST00000517028 307 ntBASIC5.19□□□□□ -1.58
LIM2P55344 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.19□□□□□ -1.58
LIM2P55344 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
LIM2P55344 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.19□□□□□ -1.58
LIM2P55344 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
LIM2P55344 AC090286.3-201ENST00000573133 187 ntBASIC5.19□□□□□ -1.58
LIM2P55344 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LIM2P55344 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.19□□□□□ -1.58
LIM2P55344 AP001542.1-201ENST00000591314 200 ntBASIC5.19□□□□□ -1.58
LIM2P55344 AC107993.1-201ENST00000591343 684 ntBASIC5.19□□□□□ -1.58
LIM2P55344 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms