Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
HOXA1P49639 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXA1P49639 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 SNORA72.3-201ENST00000365074 132 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 BMS1P3-201ENST00000372011 932 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXA1P49639 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXA1P49639 RN7SKP247-201ENST00000411094 308 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXA1P49639 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 GPN3P1-201ENST00000423883 535 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 AL354707.3-201ENST00000427308 331 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 RPS26P4-201ENST00000431743 355 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 AL512661.1-201ENST00000434586 1253 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXA1P49639 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXA1P49639 GAPDHP23-201ENST00000444823 993 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXA1P49639 AL162739.1-201ENST00000450606 307 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 CLIC4P1-201ENST00000453177 535 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 SETP21-201ENST00000514799 892 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 AC093816.1-201ENST00000515076 913 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 RNU6-319P-201ENST00000516025 108 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 AC103833.1-201ENST00000517442 172 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 IGLV3-24-201ENST00000517477 197 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.92□□□□□ -1.62
HOXA1P49639 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXA1P49639 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 SLC25A51P2-201ENST00000535708 889 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 AC090022.1-201ENST00000546569 311 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXA1P49639 AC037479.1-201ENST00000558361 625 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 RNU4ATAC-201ENST00000580972 127 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXA1P49639 RN7SL475P-201ENST00000583379 298 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 AC096947.1-201ENST00000603233 470 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXA1P49639 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 AP001962.1-201ENST00000624114 559 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXA1P49639 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.92□□□□□ -1.62
HOXA1P49639 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
HOXA1P49639 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXA1P49639 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
HOXA1P49639 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 AC093225.1-201ENST00000506867 1408 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXA1P49639 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
HOXA1P49639 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXA1P49639 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
HOXA1P49639 VDAC2P1-201ENST00000399358 958 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 HYALP1-201ENST00000417674 1279 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 RPS7P8-201ENST00000418311 581 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXA1P49639 SOCS5P1-201ENST00000440415 949 ntBASIC4.91□□□□□ -1.62
HOXA1P49639 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXA1P49639 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXA1P49639 MTND6P5-201ENST00000448266 512 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms