Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NEPNP-201ENST00000404786 1371 ntBASIC5.96□□□□□ -1.45
PTPN9P43378 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.96□□□□□ -1.46
PTPN9P43378 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.96□□□□□ -1.46
PTPN9P43378 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.96□□□□□ -1.46
PTPN9P43378 OR52B3P-201ENST00000314715 928 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 MIR375-201ENST00000362103 64 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 SNORA27.3-201ENST00000364937 134 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.96□□□□□ -1.46
PTPN9P43378 SLC20A1P1-201ENST00000413906 956 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 TRIM60P17-201ENST00000415181 719 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 RNF10P1-201ENST00000418589 369 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 NENFP1-201ENST00000419476 466 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.96□□□□□ -1.46
PTPN9P43378 AC127526.2-201ENST00000426436 775 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
PTPN9P43378 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC5.96□□□□□ -1.46
PTPN9P43378 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.96□□□□□ -1.46
PTPN9P43378 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.96□□□□□ -1.46
PTPN9P43378 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 NDUFA5P5-201ENST00000468361 342 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 AC022215.1-201ENST00000481770 362 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
PTPN9P43378 MTND3P3-201ENST00000505004 126 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.96□□□□□ -1.46
PTPN9P43378 RNU6-491P-201ENST00000516099 110 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 AP003049.1-201ENST00000529418 457 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 AC134349.2-201ENST00000535136 910 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.96□□□□□ -1.46
PTPN9P43378 AGGF1P7-201ENST00000562369 913 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.96□□□□□ -1.46
PTPN9P43378 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.96□□□□□ -1.46
PTPN9P43378 AC063977.5-201ENST00000601044 974 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 AL512506.1-201ENST00000613918 449 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 AC090607.5-201ENST00000615692 224 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
PTPN9P43378 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.96□□□□□ -1.46
PTPN9P43378 AC000095.2-202ENST00000637415 154 ntBASIC5.96□□□□□ -1.46
PTPN9P43378 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.96□□□□□ -1.46
PTPN9P43378 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
PTPN9P43378 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
PTPN9P43378 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.46
PTPN9P43378 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.96□□□□□ -1.46
PTPN9P43378 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.96□□□□□ -1.46
PTPN9P43378 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
PTPN9P43378 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.96□□□□□ -1.46
PTPN9P43378 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
PTPN9P43378 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
PTPN9P43378 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
PTPN9P43378 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
PTPN9P43378 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.46
PTPN9P43378 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
PTPN9P43378 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.95□□□□□ -1.46
PTPN9P43378 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
PTPN9P43378 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
PTPN9P43378 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
PTPN9P43378 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.95□□□□□ -1.46
PTPN9P43378 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
PTPN9P43378 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
PTPN9P43378 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
PTPN9P43378 AC023490.2-201ENST00000359859 470 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 MIR365B-201ENST00000362317 111 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 RNA5SP30-201ENST00000365552 115 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 RAB5CP1-201ENST00000395972 580 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 CCNB2P1-201ENST00000399411 1150 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 LYPLA1P3-201ENST00000402650 695 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 NPM1P38-201ENST00000403835 865 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 SNORA11.5-201ENST00000408163 128 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.95□□□□□ -1.46
PTPN9P43378 VN1R31P-201ENST00000417498 730 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.95□□□□□ -1.46
PTPN9P43378 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.95□□□□□ -1.46
PTPN9P43378 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.95□□□□□ -1.46
PTPN9P43378 AL590762.3-201ENST00000436372 640 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC5.95□□□□□ -1.46
PTPN9P43378 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.95□□□□□ -1.46
PTPN9P43378 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
PTPN9P43378 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.95□□□□□ -1.46
PTPN9P43378 RPS23P6-201ENST00000466136 431 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.95□□□□□ -1.46
PTPN9P43378 OR7E157P-201ENST00000494376 911 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.95□□□□□ -1.46
PTPN9P43378 AC137627.1-201ENST00000545761 289 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.95□□□□□ -1.46
PTPN9P43378 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.95□□□□□ -1.46
PTPN9P43378 DHFRP1-201ENST00000579682 559 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.95□□□□□ -1.46
PTPN9P43378 AC098483.2-201ENST00000603158 454 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 AC253576.2-201ENST00000618815 580 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 AL359742.1-201ENST00000622497 540 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC5.95□□□□□ -1.46
PTPN9P43378 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.95□□□□□ -1.46
PTPN9P43378 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
PTPN9P43378 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.95□□□□□ -1.46
PTPN9P43378 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
PTPN9P43378 CR382285.2-201ENST00000624662 1495 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 AL355488.2-201ENST00000609909 2850 ntBASIC5.95□□□□□ -1.46
PTPN9P43378 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
PTPN9P43378 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
PTPN9P43378 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms