Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
CUX1P39880 CHEK2P3-201ENST00000416118 248 ntBASIC8.9□□□□□ -0.99
CUX1P39880 AL590399.4-201ENST00000436561 601 ntBASIC8.9□□□□□ -0.99
CUX1P39880 RPL7P11-201ENST00000437586 658 ntBASIC8.9□□□□□ -0.99
CUX1P39880 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC8.9□□□□□ -0.99
CUX1P39880 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
CUX1P39880 NLRP3P1-201ENST00000622303 1785 ntBASIC8.89□□□□□ -0.99
CUX1P39880 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC8.89□□□□□ -0.99
CUX1P39880 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC8.89□□□□□ -0.99
CUX1P39880 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC8.89□□□□□ -0.99
CUX1P39880 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC8.89□□□□□ -0.99
CUX1P39880 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CUX1P39880 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CUX1P39880 AC016745.2-201ENST00000608834 3443 ntBASIC8.89□□□□□ -0.99
CUX1P39880 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CUX1P39880 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC8.89□□□□□ -0.99
CUX1P39880 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC8.89□□□□□ -0.99
CUX1P39880 NPM1P40-201ENST00000412758 733 ntBASIC8.89□□□□□ -0.99
CUX1P39880 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC8.89□□□□□ -0.99
CUX1P39880 AL390879.1-201ENST00000439143 386 ntBASIC8.89□□□□□ -0.99
CUX1P39880 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC8.89□□□□□ -0.99
CUX1P39880 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC8.89□□□□□ -0.99
CUX1P39880 RN7SL205P-201ENST00000490174 284 ntBASIC8.89□□□□□ -0.99
CUX1P39880 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC8.89□□□□□ -0.99
CUX1P39880 OR4A43P-201ENST00000532938 908 ntBASIC8.89□□□□□ -0.99
CUX1P39880 OR5AN2P-201ENST00000534535 896 ntBASIC8.89□□□□□ -0.99
CUX1P39880 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC8.89□□□□□ -0.99
CUX1P39880 RN7SL52P-201ENST00000584271 284 ntBASIC8.89□□□□□ -0.99
CUX1P39880 GMFG-202ENST00000594700 397 ntTSL 2 BASIC8.89□□□□□ -0.99
CUX1P39880 AC083809.1-201ENST00000615051 472 ntBASIC8.89□□□□□ -0.99
CUX1P39880 RN7SL722P-201ENST00000617780 284 ntBASIC8.89□□□□□ -0.99
CUX1P39880 RN7SL565P-201ENST00000618246 284 ntBASIC8.89□□□□□ -0.99
CUX1P39880 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC8.89□□□□□ -0.99
CUX1P39880 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CUX1P39880 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC8.88□□□□□ -0.99
CUX1P39880 LINC02035-201ENST00000610128 5476 ntBASIC8.88□□□□□ -0.99
CUX1P39880 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
CUX1P39880 ATP5A1P4-201ENST00000556888 1605 ntBASIC8.88□□□□□ -0.99
CUX1P39880 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC8.88□□□□□ -0.99
CUX1P39880 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
CUX1P39880 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC8.88□□□□□ -0.99
CUX1P39880 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC8.88□□□□□ -0.99
CUX1P39880 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC8.88□□□□□ -0.99
CUX1P39880 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
CUX1P39880 MIR4270-201ENST00000581799 70 ntBASIC8.88□□□□□ -0.99
CUX1P39880 EIF3FP1-201ENST00000613970 806 ntBASIC8.88□□□□□ -0.99
CUX1P39880 AC104162.1-201ENST00000430831 2382 ntBASIC8.88□□□□□ -0.99
CUX1P39880 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC8.88□□□□□ -0.99
CUX1P39880 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC8.88□□□□□ -0.99
CUX1P39880 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
CUX1P39880 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC8.87□□□□□ -0.99
CUX1P39880 BRD7P6-201ENST00000431406 1860 ntBASIC8.87□□□□□ -0.99
CUX1P39880 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
CUX1P39880 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
CUX1P39880 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC8.87□□□□□ -0.99
CUX1P39880 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
CUX1P39880 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
CUX1P39880 RNU1-59P-201ENST00000364829 162 ntBASIC8.87□□□□□ -0.99
CUX1P39880 AC068538.1-201ENST00000376856 336 ntBASIC8.87□□□□□ -0.99
CUX1P39880 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
CUX1P39880 AC092651.1-201ENST00000426110 312 ntBASIC8.87□□□□□ -0.99
CUX1P39880 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC8.87□□□□□ -0.99
CUX1P39880 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC8.87□□□□□ -0.99
CUX1P39880 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC8.87□□□□□ -0.99
CUX1P39880 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC8.87□□□□□ -0.99
CUX1P39880 AC093267.1-201ENST00000489176 961 ntBASIC8.87□□□□□ -0.99
CUX1P39880 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC8.87□□□□□ -0.99
CUX1P39880 RNA5SP43-201ENST00000516559 110 ntBASIC8.87□□□□□ -0.99
CUX1P39880 ARL6IP1P3-201ENST00000524544 560 ntBASIC8.87□□□□□ -0.99
CUX1P39880 AL161616.1-201ENST00000611867 286 ntBASIC8.87□□□□□ -0.99
CUX1P39880 U1.25-201ENST00000614085 162 ntBASIC8.87□□□□□ -0.99
CUX1P39880 MIR6780A-201ENST00000615089 68 ntBASIC8.87□□□□□ -0.99
CUX1P39880 U1.34-201ENST00000618578 162 ntBASIC8.87□□□□□ -0.99
CUX1P39880 U1.31-201ENST00000620022 160 ntBASIC8.87□□□□□ -0.99
CUX1P39880 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
CUX1P39880 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
CUX1P39880 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
CUX1P39880 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
CUX1P39880 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
CUX1P39880 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC8.87□□□□□ -0.99
CUX1P39880 UGT2B24P-201ENST00000514441 1597 ntBASIC8.87□□□□□ -0.99
CUX1P39880 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC8.87□□□□□ -0.99
CUX1P39880 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC8.86□□□□□ -0.99
CUX1P39880 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC8.86□□□□□ -0.99
CUX1P39880 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC8.86□□□□□ -0.99
CUX1P39880 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC8.86□□□□□ -0.99
CUX1P39880 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC8.86□□□□□ -0.99
CUX1P39880 AC079741.1-201ENST00000321498 212 ntBASIC8.86□□□□□ -0.99
CUX1P39880 RPL23AP17-201ENST00000401064 499 ntBASIC8.86□□□□□ -0.99
CUX1P39880 RPL10P10-201ENST00000403509 664 ntBASIC8.86□□□□□ -0.99
CUX1P39880 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC8.86□□□□□ -0.99
CUX1P39880 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC8.86□□□□□ -0.99
CUX1P39880 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC8.86□□□□□ -0.99
CUX1P39880 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC8.86□□□□□ -0.99
CUX1P39880 AC091912.1-201ENST00000511351 248 ntBASIC8.86□□□□□ -0.99
CUX1P39880 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC8.86□□□□□ -0.99
CUX1P39880 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC8.86□□□□□ -0.99
CUX1P39880 AC073869.8-201ENST00000641806 335 ntBASIC8.86□□□□□ -0.99
CUX1P39880 AC100757.1-201ENST00000616872 1835 ntBASIC8.86□□□□□ -0.99
CUX1P39880 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC8.86□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms