Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
COL6A3P12111 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 PPIP5K1-201ENST00000334933 5586 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC5.38□□□□□ -1.55
COL6A3P12111 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 AC003973.3-201ENST00000624863 2822 ntBASIC5.38□□□□□ -1.55
COL6A3P12111 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.38□□□□□ -1.55
COL6A3P12111 MIR298-201ENST00000401212 88 ntBASIC5.38□□□□□ -1.55
COL6A3P12111 RIMKLBP2-201ENST00000424737 654 ntBASIC5.38□□□□□ -1.55
COL6A3P12111 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.38□□□□□ -1.55
COL6A3P12111 RPL23AP93-201ENST00000440847 484 ntBASIC5.38□□□□□ -1.55
COL6A3P12111 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.38□□□□□ -1.55
COL6A3P12111 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.38□□□□□ -1.55
COL6A3P12111 RNU1-103P-201ENST00000516502 125 ntBASIC5.38□□□□□ -1.55
COL6A3P12111 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.38□□□□□ -1.55
COL6A3P12111 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.38□□□□□ -1.55
COL6A3P12111 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.38□□□□□ -1.55
COL6A3P12111 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.38□□□□□ -1.55
COL6A3P12111 UNC79-205ENST00000555664 8484 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
COL6A3P12111 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL6A3P12111 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 LINC02210-213ENST00000591271 9678 ntTSL 3 BASIC5.37□□□□□ -1.55
COL6A3P12111 AC120036.2-201ENST00000509729 1474 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.37□□□□□ -1.55
COL6A3P12111 RPS4XP16-201ENST00000427198 791 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 NUTF2P3-201ENST00000448540 384 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.37□□□□□ -1.55
COL6A3P12111 AGGF1P7-201ENST00000562369 913 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 ZNF592-201ENST00000299927 7863 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
COL6A3P12111 AC005618.1-201ENST00000606901 3148 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 LINC01616-201ENST00000561816 2280 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 TEK-202ENST00000406359 3935 ntTSL 2 BASIC5.37□□□□□ -1.55
COL6A3P12111 HUWE1-202ENST00000262854 14739 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.37□□□□□ -1.55
COL6A3P12111 AL137845.2-201ENST00000444292 988 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.37□□□□□ -1.55
COL6A3P12111 AC245028.2-201ENST00000458673 253 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 YWHABP2-201ENST00000540201 713 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 AC015818.6-201ENST00000584274 634 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.37□□□□□ -1.55
COL6A3P12111 BCORL1-201ENST00000218147 6860 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL6A3P12111 FRMPD2-201ENST00000305531 4665 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
COL6A3P12111 RPRD2-203ENST00000401000 7605 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC5.37□□□□□ -1.55
COL6A3P12111 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
COL6A3P12111 OR1D2-203ENST00000641833 4887 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL6A3P12111 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
COL6A3P12111 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.37□□□□□ -1.55
COL6A3P12111 PIGN-251ENST00000640876 6045 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL6A3P12111 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC5.37□□□□□ -1.55
COL6A3P12111 SCN10A-201ENST00000449082 6418 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 KIAA1328-207ENST00000591619 5881 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A3P12111 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
COL6A3P12111 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.37□□□□□ -1.55
COL6A3P12111 MIR449B-201ENST00000384995 97 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 AL009179.1-201ENST00000406085 265 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC5.37□□□□□ -1.55
COL6A3P12111 RPS29P10-201ENST00000439197 166 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 AC073465.2-201ENST00000440938 498 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 AC091564.1-201ENST00000464563 479 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.37□□□□□ -1.55
COL6A3P12111 AC090424.1-201ENST00000535243 736 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 MTCO1P1-201ENST00000624263 1081 ntBASIC5.37□□□□□ -1.55
COL6A3P12111 MED12-201ENST00000333646 6977 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
COL6A3P12111 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 AC233968.1-201ENST00000611212 1300 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 MTHFD1-202ENST00000545908 6814 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A3P12111 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
COL6A3P12111 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 AP003119.3-201ENST00000566747 4192 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 MYO15A-217ENST00000615845 11860 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
COL6A3P12111 OR10T1P-201ENST00000424327 947 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 RPS12P10-201ENST00000427031 377 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 RN7SL443P-201ENST00000464331 290 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC5.36□□□□□ -1.55
COL6A3P12111 ENPP7P9-201ENST00000514456 627 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC5.36□□□□□ -1.55
COL6A3P12111 ARF4P1-201ENST00000605447 541 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A3P12111 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms