Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.88□□□□□ -1.31
COL6A1P12109 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.88□□□□□ -1.31
COL6A1P12109 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 AC027088.4-201ENST00000611559 1947 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 AC003985.2-201ENST00000562268 1669 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 AP000547.3-204ENST00000588548 2523 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 Z93929.1-201ENST00000418200 1475 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 AC109780.1-201ENST00000451768 1344 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 ZNF602P-201ENST00000405929 924 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 RNU4-34P-201ENST00000410431 124 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.87□□□□□ -1.31
COL6A1P12109 MTATP6P20-201ENST00000414147 562 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC6.87□□□□□ -1.31
COL6A1P12109 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC6.87□□□□□ -1.31
COL6A1P12109 TCEA1P2-201ENST00000420496 906 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 AL139415.1-201ENST00000424862 352 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC6.87□□□□□ -1.31
COL6A1P12109 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.87□□□□□ -1.31
COL6A1P12109 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC073909.1-201ENST00000447112 999 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 EXOSC3P1-201ENST00000448649 500 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC087672.1-201ENST00000479876 766 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 AC093270.2-201ENST00000486157 792 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 DUTP7-201ENST00000507982 486 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 AC074087.1-201ENST00000512059 724 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 Y_RNA.710-201ENST00000516975 110 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC6.87□□□□□ -1.31
COL6A1P12109 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 MIR4776-2-201ENST00000580204 80 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC015726.1-201ENST00000602353 681 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 FO393422.1-201ENST00000603908 708 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 AL022161.1-201ENST00000604390 213 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC079416.3-201ENST00000624479 549 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 AC092821.2-201ENST00000545710 2042 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.87□□□□□ -1.31
COL6A1P12109 AL359976.1-201ENST00000418655 3528 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL6A1P12109 HSPD1P7-201ENST00000447985 1686 ntBASIC6.87□□□□□ -1.31
COL6A1P12109 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
COL6A1P12109 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.86□□□□□ -1.31
COL6A1P12109 CLCA3P-203ENST00000490028 2781 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL6A1P12109 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL6A1P12109 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL6A1P12109 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL6A1P12109 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL6A1P12109 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
COL6A1P12109 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.86□□□□□ -1.31
COL6A1P12109 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL6A1P12109 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL6A1P12109 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL6A1P12109 RNU6-1263P-201ENST00000384601 106 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AL050335.1-201ENST00000396909 869 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC6.86□□□□□ -1.31
COL6A1P12109 NPM1P4-201ENST00000414095 812 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC6.86□□□□□ -1.31
COL6A1P12109 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 NIPA2P1-201ENST00000426223 976 ntBASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms