Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC7.31□□□□□ -1.24
HMGB1P09429 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC7.31□□□□□ -1.24
HMGB1P09429 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
HMGB1P09429 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC7.31□□□□□ -1.24
HMGB1P09429 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
HMGB1P09429 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
HMGB1P09429 AC005332.5-201ENST00000591222 2919 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
HMGB1P09429 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC7.3□□□□□ -1.24
HMGB1P09429 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC090971.4-201ENST00000560291 1800 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
HMGB1P09429 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
HMGB1P09429 AL121835.1-201ENST00000404250 354 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 AL590290.1-201ENST00000405336 380 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 RNU2-72P-201ENST00000411175 163 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC015977.1-201ENST00000418887 292 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.3□□□□□ -1.24
HMGB1P09429 AL354707.3-201ENST00000427308 331 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 LINC00328-2P-201ENST00000436585 219 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 OR3D1P-201ENST00000438288 955 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 SEPHS1P4-201ENST00000446112 1176 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
HMGB1P09429 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC7.3□□□□□ -1.24
HMGB1P09429 MTND2P8-201ENST00000450555 1025 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 AL035690.1-201ENST00000490892 383 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC7.3□□□□□ -1.24
HMGB1P09429 TBCA-203ENST00000517679 545 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 MAL2-205ENST00000521048 575 ntTSL 4 BASIC7.3□□□□□ -1.24
HMGB1P09429 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC036111.2-201ENST00000533247 901 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC7.3□□□□□ -1.24
HMGB1P09429 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC7.3□□□□□ -1.24
HMGB1P09429 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
HMGB1P09429 OSTC-205ENST00000613215 876 ntTSL 2 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC012676.3-201ENST00000614983 479 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
HMGB1P09429 MIR6823-201ENST00000622118 61 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC7.3□□□□□ -1.24
HMGB1P09429 OXSM-209ENST00000626005 309 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 LGI1-209ENST00000627699 664 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC7.3□□□□□ -1.24
HMGB1P09429 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
HMGB1P09429 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 AC093671.1-201ENST00000624981 2929 ntBASIC7.3□□□□□ -1.24
HMGB1P09429 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC7.3□□□□□ -1.24
HMGB1P09429 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
HMGB1P09429 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
HMGB1P09429 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HMGB1P09429 AC092451.3-201ENST00000625067 1343 ntBASIC7.29□□□□□ -1.24
HMGB1P09429 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HMGB1P09429 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HMGB1P09429 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HMGB1P09429 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
HMGB1P09429 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HMGB1P09429 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC7.29□□□□□ -1.24
HMGB1P09429 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC7.29□□□□□ -1.24
HMGB1P09429 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
HMGB1P09429 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HMGB1P09429 MIR191-201ENST00000384873 92 ntBASIC7.29□□□□□ -1.24
HMGB1P09429 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
HMGB1P09429 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HMGB1P09429 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC7.29□□□□□ -1.24
HMGB1P09429 VN1R20P-201ENST00000425215 966 ntBASIC7.29□□□□□ -1.24
HMGB1P09429 AC099782.1-201ENST00000425889 474 ntBASIC7.29□□□□□ -1.24
HMGB1P09429 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC7.29□□□□□ -1.24
HMGB1P09429 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC7.29□□□□□ -1.24
HMGB1P09429 KF459542.1-201ENST00000450908 553 ntBASIC7.29□□□□□ -1.24
HMGB1P09429 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC7.29□□□□□ -1.24
HMGB1P09429 RN7SL612P-201ENST00000497704 295 ntBASIC7.29□□□□□ -1.24
HMGB1P09429 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC7.29□□□□□ -1.24
HMGB1P09429 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC7.29□□□□□ -1.24
HMGB1P09429 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC7.29□□□□□ -1.24
HMGB1P09429 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
HMGB1P09429 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC7.29□□□□□ -1.24
HMGB1P09429 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC7.29□□□□□ -1.24
HMGB1P09429 AL121594.4-201ENST00000556211 1196 ntBASIC7.29□□□□□ -1.24
HMGB1P09429 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC7.29□□□□□ -1.24
HMGB1P09429 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC7.29□□□□□ -1.24
HMGB1P09429 AC115085.1-201ENST00000588924 229 ntBASIC7.29□□□□□ -1.24
HMGB1P09429 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC7.29□□□□□ -1.24
HMGB1P09429 AC005479.3-201ENST00000602790 431 ntBASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms