Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL355488.2-201ENST00000609909 2850 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 MIR133B-201ENST00000362210 119 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 RNA5SP335-201ENST00000363817 110 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 MIR323B-201ENST00000385269 82 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 SRSF1P1-201ENST00000424058 520 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 PRUNEP1-201ENST00000425846 705 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 KATNBL1P2-201ENST00000433311 835 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 RPS26P39-201ENST00000469206 341 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 SIAH1P1-201ENST00000479411 923 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 EIF3LP3-201ENST00000495197 822 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 IGKV2-18-201ENST00000522607 343 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 BLZF2P-201ENST00000553776 1130 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AP000769.2-201ENST00000602344 396 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC025857.2-201ENST00000602711 238 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC005840.5-201ENST00000619166 599 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 AC114774.1-201ENST00000507410 1770 ntBASIC5.55□□□□□ -1.52
LHX3Q9UBR4 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 RN7SKP185-201ENST00000362813 326 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 RN7SKP162-201ENST00000363605 345 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 RN7SKP59-201ENST00000410520 314 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 TRGV7-201ENST00000427089 353 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 CYCSP12-201ENST00000437729 300 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC105399.1-202ENST00000447303 205 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AL035090.1-201ENST00000454835 332 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC011225.1-201ENST00000457751 369 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AL133445.1-201ENST00000467051 452 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 RN7SL188P-201ENST00000469842 285 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 UBA52P7-201ENST00000486088 380 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 RPS26P24-201ENST00000497656 331 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC090058.1-201ENST00000498788 435 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 MTND6P2-201ENST00000512226 524 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AL713998.2-201ENST00000604538 1198 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 AC005261.2-201ENST00000593427 4258 ntBASIC5.54□□□□□ -1.52
LHX3Q9UBR4 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
LHX3Q9UBR4 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms