Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 MIR4311-201ENST00000580794 100 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC087468.1-201ENST00000604365 630 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 RNA5SP440-201ENST00000612665 119 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC026124.2-201ENST00000621847 656 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC012078.1-201ENST00000405035 1646 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC009962.1-201ENST00000567327 3813 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 MRE11P1-201ENST00000464884 2127 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 TMSB4XP4-201ENST00000323496 618 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 RNA5SP122-201ENST00000384457 108 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 SNORA11.3-201ENST00000408471 128 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 RN7SKP286-201ENST00000410894 299 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 AL596448.1-201ENST00000415024 392 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 BTG3P1-201ENST00000435859 716 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 RPL7P51-201ENST00000490532 749 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 AC138409.2-202ENST00000507274 458 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 AC138866.2-201ENST00000508650 584 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 DHFRP1-201ENST00000579682 559 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 AP001357.1-201ENST00000586304 1053 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 AC025857.2-201ENST00000602711 238 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 AL355488.2-201ENST00000609909 2850 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 AC126175.1-201ENST00000617041 758 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 SNORA11.6-201ENST00000619030 128 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 AC138965.3-201ENST00000623875 498 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 CU639417.4-201ENST00000623928 207 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 AC007683.2-201ENST00000624681 714 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS35Q96QK1 SRRM1P3-201ENST00000426911 2678 ntBASIC5.61□□□□□ -1.51
VPS35Q96QK1 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
VPS35Q96QK1 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 YES1P1-201ENST00000418510 1628 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 GAPDHP42-201ENST00000406848 981 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 RNA5SP178-201ENST00000410380 128 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 RMRPP5-201ENST00000411156 267 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 RPS6P23-201ENST00000413224 722 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 AL121578.1-201ENST00000428051 892 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 AC242426.1-201ENST00000435270 960 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 AL450996.1-201ENST00000445574 1202 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 AC016724.1-201ENST00000453215 421 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 DUTP7-201ENST00000507982 486 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 AC109481.1-201ENST00000509173 282 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 AC021146.10-201ENST00000515628 706 ntBASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms