Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC5.77□□□□□ -1.48
COL28A1Q2UY09 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC005725.1-201ENST00000577346 2607 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 RNA5SP46-201ENST00000362370 120 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 SNORA27.3-201ENST00000364937 134 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 OR7E101P-201ENST00000400428 513 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 NACAP7-201ENST00000407371 609 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 UBE2V1P15-201ENST00000407776 448 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AL139128.1-201ENST00000413921 941 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 RBMY2KP-201ENST00000418221 992 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 RPS7P8-201ENST00000418311 581 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 MTCO1P51-201ENST00000427672 1060 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AK3P5-201ENST00000432033 519 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 FTLP8-201ENST00000446770 267 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC092967.1-201ENST00000449016 481 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 DNAJB5P1-201ENST00000454004 806 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 snoU13.29-201ENST00000459370 104 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 CBX1P5-201ENST00000475330 559 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC092865.4-201ENST00000477936 615 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AK4P6-201ENST00000505168 528 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC010343.2-201ENST00000510162 224 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 OR51K1P-201ENST00000510214 950 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC021269.1-201ENST00000526860 705 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 PCNAP4-201ENST00000532690 730 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC004825.1-201ENST00000555068 586 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 MIR4776-2-201ENST00000580204 80 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 RPL12P48-201ENST00000605620 304 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 OR51C1P-201ENST00000608504 942 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 BIN2P1-201ENST00000504996 1530 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC110373.1-201ENST00000505994 3505 ntBASIC5.77□□□□□ -1.49
COL28A1Q2UY09 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL28A1Q2UY09 AC092070.2-203ENST00000598377 3644 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 Y_RNA.110-201ENST00000363220 99 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 RN7SKP124-201ENST00000364730 341 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 RPL23AP27-201ENST00000415161 451 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 149.3 ms