Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 RNU6-757P-201ENST00000410334 100 ntBASIC7.11□□□□□ -1.27
LIG3P49916 RN7SKP254-201ENST00000410685 310 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC7.11□□□□□ -1.27
LIG3P49916 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC7.11□□□□□ -1.27
LIG3P49916 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 XIST-201ENST00000416330 750 ntTSL 2 BASIC7.11□□□□□ -1.27
LIG3P49916 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC7.11□□□□□ -1.27
LIG3P49916 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC7.11□□□□□ -1.27
LIG3P49916 AC093084.1-201ENST00000424233 687 ntBASIC7.11□□□□□ -1.27
LIG3P49916 UQCRHP1-204ENST00000424609 274 ntBASIC7.11□□□□□ -1.27
LIG3P49916 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC7.11□□□□□ -1.27
LIG3P49916 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC7.11□□□□□ -1.27
LIG3P49916 AC015983.1-201ENST00000441577 373 ntBASIC7.11□□□□□ -1.27
LIG3P49916 BX005266.3-201ENST00000443013 1075 ntBASIC7.11□□□□□ -1.27
LIG3P49916 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 TPMTP4-201ENST00000450749 678 ntBASIC7.11□□□□□ -1.27
LIG3P49916 ST13P21-201ENST00000453250 1098 ntBASIC7.11□□□□□ -1.27
LIG3P49916 OR7E7P-201ENST00000455678 1012 ntBASIC7.11□□□□□ -1.27
LIG3P49916 GAPDHP53-201ENST00000458397 924 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AC079193.1-201ENST00000460497 588 ntBASIC7.11□□□□□ -1.27
LIG3P49916 RPS16P9-201ENST00000477220 427 ntBASIC7.11□□□□□ -1.27
LIG3P49916 RN7SL259P-201ENST00000478499 253 ntBASIC7.11□□□□□ -1.27
LIG3P49916 RPL23AP37-201ENST00000479658 549 ntBASIC7.11□□□□□ -1.27
LIG3P49916 CREM-242ENST00000490511 469 ntTSL 2 BASIC7.11□□□□□ -1.27
LIG3P49916 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC7.11□□□□□ -1.27
LIG3P49916 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC7.11□□□□□ -1.27
LIG3P49916 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC7.11□□□□□ -1.27
LIG3P49916 GTF2IP11-201ENST00000526931 420 ntBASIC7.11□□□□□ -1.27
LIG3P49916 OR5M6P-201ENST00000530227 937 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC7.11□□□□□ -1.27
LIG3P49916 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC7.11□□□□□ -1.27
LIG3P49916 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC7.11□□□□□ -1.27
LIG3P49916 MIR4999-201ENST00000585029 91 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AC068790.7-201ENST00000602347 528 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AF131215.7-201ENST00000602443 707 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AL021997.1-201ENST00000605757 193 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AL021368.3-201ENST00000607119 578 ntBASIC7.11□□□□□ -1.27
LIG3P49916 PTCHD3P1-201ENST00000612350 537 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AC007204.2-201ENST00000615022 616 ntBASIC7.11□□□□□ -1.27
LIG3P49916 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 AL161420.1-201ENST00000619393 264 ntBASIC7.11□□□□□ -1.27
LIG3P49916 PDCD6IPP1-202ENST00000622242 1064 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AC012254.5-201ENST00000623573 478 ntBASIC7.11□□□□□ -1.27
LIG3P49916 MIR665-201ENST00000635949 72 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC7.11□□□□□ -1.27
LIG3P49916 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC7.11□□□□□ -1.27
LIG3P49916 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC7.1□□□□□ -1.27
LIG3P49916 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 SEC63P2-201ENST00000503863 1939 ntBASIC7.1□□□□□ -1.27
LIG3P49916 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 PDCL3P5-201ENST00000398028 722 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AP000357.1-201ENST00000409926 1165 ntBASIC7.1□□□□□ -1.27
LIG3P49916 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC7.1□□□□□ -1.27
LIG3P49916 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC7.1□□□□□ -1.27
LIG3P49916 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC7.1□□□□□ -1.27
LIG3P49916 HSPE1P16-201ENST00000426640 348 ntBASIC7.1□□□□□ -1.27
LIG3P49916 CNOT7P1-201ENST00000429006 852 ntBASIC7.1□□□□□ -1.27
LIG3P49916 KCTD9P1-201ENST00000430462 1167 ntBASIC7.1□□□□□ -1.27
LIG3P49916 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC7.1□□□□□ -1.27
LIG3P49916 NMNAT1P2-201ENST00000435192 860 ntBASIC7.1□□□□□ -1.27
LIG3P49916 RPS10P14-201ENST00000440748 502 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AL356133.1-201ENST00000444762 372 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AL606662.1-201ENST00000445763 553 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC7.1□□□□□ -1.27
LIG3P49916 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC7.1□□□□□ -1.27
LIG3P49916 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 AC128716.1-201ENST00000475129 166 ntBASIC7.1□□□□□ -1.27
LIG3P49916 GAPDHP36-201ENST00000480688 918 ntBASIC7.1□□□□□ -1.27
LIG3P49916 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC7.1□□□□□ -1.27
LIG3P49916 SETP21-201ENST00000514799 892 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC7.1□□□□□ -1.27
LIG3P49916 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC7.1□□□□□ -1.27
LIG3P49916 MAL2-207ENST00000522828 603 ntTSL 3 BASIC7.1□□□□□ -1.27
LIG3P49916 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
LIG3P49916 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC7.1□□□□□ -1.27
LIG3P49916 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC7.1□□□□□ -1.27
LIG3P49916 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC7.1□□□□□ -1.27
LIG3P49916 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 HIGD1AP17-201ENST00000554576 276 ntBASIC7.1□□□□□ -1.27
LIG3P49916 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC7.1□□□□□ -1.27
LIG3P49916 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 RN7SL426P-201ENST00000579106 295 ntBASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms