Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR138-2-201ENST00000384916 84 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 RN7SKP161-201ENST00000411110 305 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC092646.1-201ENST00000427142 901 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC005297.1-201ENST00000444765 862 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AL354872.1-201ENST00000456361 967 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 TREML3P-201ENST00000457327 501 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 MTND3P7-201ENST00000474435 343 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 ST13P12-201ENST00000508958 1094 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 ASNSP4-201ENST00000511103 447 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 OR5G4P-201ENST00000525251 760 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 MTND2P26-201ENST00000528255 1029 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AP004607.5-201ENST00000532034 217 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC009101.1-201ENST00000568135 242 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 RPS11-205ENST00000599561 430 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC073648.5-201ENST00000603502 305 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 BUB1P1-201ENST00000603541 607 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AP000811.1-201ENST00000603803 651 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 HNRNPA3P9-201ENST00000604913 979 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AL078624.2-201ENST00000605063 554 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC024589.2-201ENST00000605642 1294 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 RACK1-235ENST00000626067 564 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC011815.2-201ENST00000618230 2021 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 SUCLA2P2-201ENST00000417269 1309 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC126474.2-201ENST00000623268 1750 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 POT1-202ENST00000393329 3950 ntTSL 5 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC079248.1-201ENST00000427568 1546 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 VTRNA3-1P-201ENST00000362552 102 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AL050335.1-201ENST00000396909 869 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AL929472.1-201ENST00000417484 429 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AL672212.1-201ENST00000422246 400 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 OSTCP5-201ENST00000425293 453 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AL008629.1-201ENST00000438615 184 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 ISCA1P2-201ENST00000438679 421 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC007000.2-201ENST00000442564 487 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC009244.1-201ENST00000450566 258 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 MTND3P10-201ENST00000450967 341 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 RPSAP24-201ENST00000461543 873 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC114728.1-201ENST00000488289 483 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 SSR3-208ENST00000496050 579 ntTSL 4 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC080014.1-201ENST00000496877 1201 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 PPM1AP1-201ENST00000502740 1135 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC008868.1-201ENST00000509786 737 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC090774.2-201ENST00000584708 322 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC002069.2-201ENST00000603580 883 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 QTRT1P1-201ENST00000604344 1078 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AL139286.2-201ENST00000606838 396 ntBASIC7.44□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms