Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AC092079.1-201ENST00000558620 1985 ntBASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 RNU1-150P-201ENST00000362491 162 ntBASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 CYCSP11-201ENST00000436426 315 ntBASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AL589765.3-201ENST00000446084 462 ntBASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 EIF2S2P4-201ENST00000461070 984 ntBASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 PFN1P6-201ENST00000476786 399 ntBASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 PANCR-201ENST00000503456 493 ntTSL 5 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AC008945.1-201ENST00000505144 499 ntBASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AL021918.2-201ENST00000613415 194 ntBASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 AP001962.1-201ENST00000624114 559 ntBASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 OR8G3P-202ENST00000641572 1255 ntBASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.61□□□□□ -1.19
CHMP4AQ9BY43 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 SOCS5P3-201ENST00000425115 1576 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 RNA5SP251-201ENST00000410614 137 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AC019205.1-201ENST00000421830 730 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 DEFA9P-201ENST00000433042 285 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 MTND2P2-201ENST00000434633 945 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 XKRYP6-201ENST00000440468 1116 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 XKRYP3-201ENST00000442113 1116 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 RPL7L1P1-201ENST00000448259 785 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AP006222.1-205ENST00000450734 457 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AC007386.1-201ENST00000455212 582 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 RPS17P15-201ENST00000475609 349 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AC020779.1-201ENST00000478757 796 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 IGKV1OR22-1-201ENST00000521497 360 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 HMGN2P36-201ENST00000529541 409 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 TRIM51DP-201ENST00000529746 596 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AC007346.2-201ENST00000564816 892 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AC092121.1-201ENST00000569452 202 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AP001496.3-201ENST00000580230 913 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AC006115.2-201ENST00000596823 202 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AC124856.1-201ENST00000600819 896 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 5S_rRNA.28-201ENST00000638107 119 ntBASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
CHMP4AQ9BY43 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 TMSB4XP2-201ENST00000335179 210 ntBASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 SNORA11.3-201ENST00000408471 128 ntBASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 SDHDP6-201ENST00000414693 480 ntBASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC7.59□□□□□ -1.19
CHMP4AQ9BY43 AL606490.7-201ENST00000433136 191 ntBASIC7.59□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms