Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 UBA52P3-201ENST00000491303 382 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC008496.1-201ENST00000509131 295 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RNU6-150P-201ENST00000516237 95 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RNU6-314P-201ENST00000516574 104 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC008429.4-201ENST00000521201 182 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 DEFB108A-201ENST00000530110 222 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 NMNAT1P1-201ENST00000554095 876 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 CYCSP2-201ENST00000558168 301 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC091489.2-201ENST00000566263 604 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC103808.6-201ENST00000578035 464 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 BOLA2P1-201ENST00000584794 232 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AP001120.4-201ENST00000590231 108 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 OR7E94P-202ENST00000601375 790 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC009027.1-201ENST00000604510 479 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AP001521.1-201ENST00000609150 300 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AL121890.2-201ENST00000617644 465 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 TEX41-279ENST00000629149 609 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 OR5AK4P-201ENST00000635912 903 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC073869.7-201ENST00000640874 297 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 USP3-201ENST00000268049 5311 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 TRIM51GP-201ENST00000534741 1350 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RNF14-203ENST00000394514 2905 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 MAPK10-279ENST00000641157 2449 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 CCDC162P-202ENST00000368966 6751 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 ZFP2-205ENST00000523286 2154 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC018688.1-201ENST00000636528 1754 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 WNK1-220ENST00000574564 1401 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 TRIM6-201ENST00000278302 3217 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 OSGIN2-201ENST00000297438 4209 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 CEP41-213ENST00000489512 3161 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 RNU6-462P-201ENST00000362659 105 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 RN7SKP36-201ENST00000363997 312 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 RNU5E-5P-201ENST00000365379 116 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 RNU5A-6P-201ENST00000384136 116 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 MIR128-2-201ENST00000384893 84 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 LSM5-202ENST00000409292 538 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 RNU2-28P-201ENST00000410457 189 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC073264.1-201ENST00000411508 416 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC083875.1-201ENST00000419509 405 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AL049651.2-202ENST00000419734 412 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AL050320.1-201ENST00000420044 446 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 VN1R20P-201ENST00000425215 966 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 RPSAP62-201ENST00000432596 833 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC112492.2-201ENST00000432774 1030 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AP000936.3-201ENST00000438127 255 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC108039.2-201ENST00000440214 359 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AL590004.3-202ENST00000445883 451 ntBASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms