Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC104260.2-201ENST00000623551 3497 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 MTCO1P15-201ENST00000529569 1526 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXA3P55318 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 PWAR1-201ENST00000624188 2414 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXA3P55318 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA3P55318 LINC01613-201ENST00000561476 2780 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA3P55318 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA3P55318 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXA3P55318 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXA3P55318 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 RNU1-146P-201ENST00000364015 165 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA3P55318 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 AC005522.1-201ENST00000395416 346 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 RNA5SP198-201ENST00000410376 127 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 RN7SKP29-201ENST00000410957 272 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 RNU2-18P-201ENST00000411224 162 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 AL357752.1-201ENST00000412817 349 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 SETP10-201ENST00000424368 814 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 NANOGP4-201ENST00000427230 913 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXA3P55318 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 AL031681.1-201ENST00000443304 400 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
FOXA3P55318 AC093166.4-201ENST00000457867 318 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXA3P55318 AC113367.2-201ENST00000505749 160 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXA3P55318 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA3P55318 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXA3P55318 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXA3P55318 AC018946.1-201ENST00000560578 458 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXA3P55318 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA3P55318 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXA3P55318 AC005244.1-201ENST00000582566 339 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 AC073389.3-201ENST00000609434 935 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA3P55318 AC073869.8-201ENST00000641806 335 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXA3P55318 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 ZNF652P1-201ENST00000442420 1309 ntBASIC4.09□□□□□ -1.75
FOXA3P55318 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
FOXA3P55318 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.75
FOXA3P55318 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA3P55318 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.76
FOXA3P55318 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC4.09□□□□□ -1.76
FOXA3P55318 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
FOXA3P55318 AC100778.3-201ENST00000580060 1750 ntBASIC4.09□□□□□ -1.76
FOXA3P55318 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
FOXA3P55318 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
FOXA3P55318 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
FOXA3P55318 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
FOXA3P55318 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC4.08□□□□□ -1.76
FOXA3P55318 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
FOXA3P55318 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA3P55318 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA3P55318 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC4.08□□□□□ -1.76
FOXA3P55318 RNU1-19P-201ENST00000363306 165 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXA3P55318 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA3P55318 MIR27A-201ENST00000385073 78 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 MT-RNR2-201ENST00000387347 1559 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 HIST1H3PS1-201ENST00000404612 417 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 AL096711.1-201ENST00000404780 554 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 RN7SKP286-201ENST00000410894 299 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXA3P55318 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXA3P55318 MYB-206ENST00000420123 1051 ntTSL 5 BASIC4.08□□□□□ -1.76
FOXA3P55318 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXA3P55318 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC4.08□□□□□ -1.76
FOXA3P55318 AC092646.1-201ENST00000427142 901 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 RPL34P6-201ENST00000432390 345 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXA3P55318 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXA3P55318 AL353662.1-201ENST00000439099 327 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 DLD-205ENST00000440410 1993 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXA3P55318 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXA3P55318 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXA3P55318 AL591623.2-201ENST00000449978 222 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 AL450023.1-201ENST00000450868 751 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 PPIAP7-201ENST00000454070 489 ntBASIC4.08□□□□□ -1.76
FOXA3P55318 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXA3P55318 BBOF1-202ENST00000463558 550 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 139.1 ms