Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC244107.2-201ENST00000611773 76 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC6.7□□□□□ -1.34
COL5A3P25940 AC132825.1-201ENST00000463573 2247 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 AC012618.3-205ENST00000637896 1496 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.7□□□□□ -1.34
COL5A3P25940 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.7□□□□□ -1.34
COL5A3P25940 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
COL5A3P25940 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.69□□□□□ -1.34
COL5A3P25940 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 AC010329.1-201ENST00000593903 8328 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
COL5A3P25940 MTHFD2P5-201ENST00000320415 844 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 RPL23AP17-201ENST00000401064 499 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC6.69□□□□□ -1.34
COL5A3P25940 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.69□□□□□ -1.34
COL5A3P25940 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC6.69□□□□□ -1.34
COL5A3P25940 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC6.69□□□□□ -1.34
COL5A3P25940 RPL12P17-201ENST00000432393 498 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.69□□□□□ -1.34
COL5A3P25940 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC6.69□□□□□ -1.34
COL5A3P25940 AL590399.4-201ENST00000436561 601 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 RBMY2TP-201ENST00000451162 947 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC6.69□□□□□ -1.34
COL5A3P25940 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 FTH1P8-201ENST00000498161 514 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 RNA5SP43-201ENST00000516559 110 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 SCARNA20.4-201ENST00000516969 131 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 EDDM3DP-201ENST00000554692 434 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 RN7SL690P-201ENST00000582087 240 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.69□□□□□ -1.34
COL5A3P25940 XIST-210ENST00000602863 775 ntTSL 3 BASIC6.69□□□□□ -1.34
COL5A3P25940 AC005377.1-201ENST00000605126 456 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 MIR6758-201ENST00000620653 63 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC6.69□□□□□ -1.34
COL5A3P25940 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 AC100757.1-201ENST00000616872 1835 ntBASIC6.69□□□□□ -1.34
COL5A3P25940 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
COL5A3P25940 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
COL5A3P25940 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL5A3P25940 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
COL5A3P25940 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.68□□□□□ -1.34
COL5A3P25940 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 MIR1182-201ENST00000408363 97 ntBASIC6.68□□□□□ -1.34
COL5A3P25940 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.68□□□□□ -1.34
COL5A3P25940 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.68□□□□□ -1.34
COL5A3P25940 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC6.68□□□□□ -1.34
COL5A3P25940 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.68□□□□□ -1.34
COL5A3P25940 DAP3-209ENST00000465375 729 ntTSL 2 BASIC6.68□□□□□ -1.34
COL5A3P25940 AC140172.1-201ENST00000502928 141 ntBASIC6.68□□□□□ -1.34
COL5A3P25940 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC6.68□□□□□ -1.34
COL5A3P25940 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC6.68□□□□□ -1.34
COL5A3P25940 AP005131.7-201ENST00000610087 611 ntBASIC6.68□□□□□ -1.34
COL5A3P25940 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.68□□□□□ -1.34
COL5A3P25940 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.68□□□□□ -1.34
COL5A3P25940 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
COL5A3P25940 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL5A3P25940 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
COL5A3P25940 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.68□□□□□ -1.34
COL5A3P25940 AP002530.1-201ENST00000405705 684 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 SNORA11-201ENST00000408789 128 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 RPS26P38-201ENST00000414476 348 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 VDAC1P6-201ENST00000430062 855 ntBASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms