Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC5.67□□□□□ -1.5
MSH3P20585 AC127526.2-201ENST00000426436 775 ntBASIC5.67□□□□□ -1.5
MSH3P20585 BX119321.1-201ENST00000428912 797 ntBASIC5.67□□□□□ -1.5
MSH3P20585 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.67□□□□□ -1.5
MSH3P20585 AC073072.2-201ENST00000447425 348 ntBASIC5.67□□□□□ -1.5
MSH3P20585 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC5.67□□□□□ -1.5
MSH3P20585 AC108751.3-201ENST00000461814 1020 ntBASIC5.67□□□□□ -1.5
MSH3P20585 UBFD1P1-201ENST00000473259 814 ntBASIC5.67□□□□□ -1.5
MSH3P20585 AC007998.1-201ENST00000474156 672 ntBASIC5.67□□□□□ -1.5
MSH3P20585 DUTP1-201ENST00000493631 470 ntBASIC5.67□□□□□ -1.5
MSH3P20585 AC109481.1-201ENST00000509173 282 ntBASIC5.67□□□□□ -1.5
MSH3P20585 CCNHP1-201ENST00000513311 678 ntBASIC5.67□□□□□ -1.5
MSH3P20585 TRIM51DP-201ENST00000529746 596 ntBASIC5.67□□□□□ -1.5
MSH3P20585 AP003168.1-201ENST00000530091 307 ntBASIC5.67□□□□□ -1.5
MSH3P20585 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.67□□□□□ -1.5
MSH3P20585 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.67□□□□□ -1.5
MSH3P20585 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.67□□□□□ -1.5
MSH3P20585 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.67□□□□□ -1.5
MSH3P20585 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.67□□□□□ -1.5
MSH3P20585 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.67□□□□□ -1.5
MSH3P20585 AL354696.1-201ENST00000614652 497 ntBASIC5.67□□□□□ -1.5
MSH3P20585 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.67□□□□□ -1.5
MSH3P20585 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.67□□□□□ -1.5
MSH3P20585 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 UGT2B24P-201ENST00000514441 1597 ntBASIC5.67□□□□□ -1.5
MSH3P20585 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
MSH3P20585 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 AC012078.1-201ENST00000405035 1646 ntBASIC5.66□□□□□ -1.5
MSH3P20585 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.66□□□□□ -1.5
MSH3P20585 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.66□□□□□ -1.5
MSH3P20585 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.66□□□□□ -1.5
MSH3P20585 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH3P20585 AL360270.2-201ENST00000562952 5985 ntBASIC5.66□□□□□ -1.5
MSH3P20585 AL138820.1-201ENST00000617901 5305 ntBASIC5.66□□□□□ -1.5
MSH3P20585 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
MSH3P20585 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSH3P20585 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSH3P20585 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH3P20585 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH3P20585 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSH3P20585 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSH3P20585 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSH3P20585 HMGB1P20-201ENST00000402555 677 ntBASIC5.66□□□□□ -1.5
MSH3P20585 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.66□□□□□ -1.5
MSH3P20585 RMRPP5-201ENST00000411156 267 ntBASIC5.66□□□□□ -1.5
MSH3P20585 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.66□□□□□ -1.5
MSH3P20585 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.66□□□□□ -1.5
MSH3P20585 BX276092.6-201ENST00000430476 250 ntBASIC5.66□□□□□ -1.5
MSH3P20585 RSL24D1P8-201ENST00000434442 492 ntBASIC5.66□□□□□ -1.5
MSH3P20585 GAPDHP48-201ENST00000436626 961 ntBASIC5.66□□□□□ -1.5
MSH3P20585 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.66□□□□□ -1.5
MSH3P20585 NDUFA5P8-201ENST00000449019 346 ntBASIC5.66□□□□□ -1.5
MSH3P20585 BX276092.8-201ENST00000455722 250 ntBASIC5.66□□□□□ -1.5
MSH3P20585 RPSAP37-201ENST00000470913 821 ntBASIC5.66□□□□□ -1.5
MSH3P20585 NPM1P21-201ENST00000513394 762 ntBASIC5.66□□□□□ -1.5
MSH3P20585 CYCSP22-201ENST00000517555 339 ntBASIC5.66□□□□□ -1.5
MSH3P20585 AC022826.1-201ENST00000519383 805 ntBASIC5.66□□□□□ -1.5
MSH3P20585 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.66□□□□□ -1.5
MSH3P20585 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.66□□□□□ -1.5
MSH3P20585 HMGB1P42-201ENST00000532126 553 ntBASIC5.66□□□□□ -1.5
MSH3P20585 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.66□□□□□ -1.5
MSH3P20585 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.66□□□□□ -1.5
MSH3P20585 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.66□□□□□ -1.5
MSH3P20585 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.66□□□□□ -1.5
MSH3P20585 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.66□□□□□ -1.5
MSH3P20585 AC245128.3-201ENST00000594721 748 ntBASIC5.66□□□□□ -1.5
MSH3P20585 HIRAP1-201ENST00000605318 787 ntBASIC5.66□□□□□ -1.5
MSH3P20585 RNA5SP439-201ENST00000617595 124 ntBASIC5.66□□□□□ -1.5
MSH3P20585 AC005618.4-201ENST00000625053 554 ntBASIC5.66□□□□□ -1.5
MSH3P20585 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.66□□□□□ -1.5
MSH3P20585 MIR193BHG-214ENST00000641765 509 ntBASIC5.66□□□□□ -1.5
MSH3P20585 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.66□□□□□ -1.5
MSH3P20585 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
MSH3P20585 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH3P20585 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH3P20585 AC092451.3-201ENST00000625067 1343 ntBASIC5.66□□□□□ -1.5
MSH3P20585 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH3P20585 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSH3P20585 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.5
MSH3P20585 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSH3P20585 AC114774.1-201ENST00000507410 1770 ntBASIC5.65□□□□□ -1.5
MSH3P20585 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.65□□□□□ -1.5
MSH3P20585 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSH3P20585 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSH3P20585 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.65□□□□□ -1.5
MSH3P20585 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSH3P20585 OR5T3-201ENST00000303059 1023 ntBASIC5.65□□□□□ -1.5
MSH3P20585 MIR130A-201ENST00000385274 89 ntBASIC5.65□□□□□ -1.5
MSH3P20585 OR2AT2P-201ENST00000413438 905 ntBASIC5.65□□□□□ -1.5
MSH3P20585 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.65□□□□□ -1.5
MSH3P20585 AL158827.1-201ENST00000416300 391 ntBASIC5.65□□□□□ -1.5
MSH3P20585 TRGV7-201ENST00000427089 353 ntBASIC5.65□□□□□ -1.5
MSH3P20585 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.65□□□□□ -1.5
MSH3P20585 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.65□□□□□ -1.5
MSH3P20585 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms