Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RN7SKP253-201ENST00000516424 309 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 AC008739.3-201ENST00000603262 127 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 CR381572.2-201ENST00000624852 397 ntBASIC5.43□□□□□ -1.54
COL6A3P12111 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A3P12111 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A3P12111 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
COL6A3P12111 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A3P12111 AL080317.3-201ENST00000607434 4315 ntBASIC5.42□□□□□ -1.54
COL6A3P12111 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 AKAP12-203ENST00000359755 6190 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
COL6A3P12111 KIAA1958-201ENST00000337530 11775 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
COL6A3P12111 MIR551A-201ENST00000385042 96 ntBASIC5.42□□□□□ -1.54
COL6A3P12111 RPSAP35-201ENST00000413753 818 ntBASIC5.42□□□□□ -1.54
COL6A3P12111 BX510359.2-201ENST00000417920 305 ntBASIC5.42□□□□□ -1.54
COL6A3P12111 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.42□□□□□ -1.54
COL6A3P12111 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 TPM3P3-201ENST00000521343 354 ntBASIC5.42□□□□□ -1.54
COL6A3P12111 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.42□□□□□ -1.54
COL6A3P12111 SOX5P1-201ENST00000524155 1127 ntBASIC5.42□□□□□ -1.54
COL6A3P12111 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.42□□□□□ -1.54
COL6A3P12111 RN7SL356P-201ENST00000582228 248 ntBASIC5.42□□□□□ -1.54
COL6A3P12111 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
COL6A3P12111 SEL1L-201ENST00000336735 7925 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.42□□□□□ -1.54
COL6A3P12111 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A3P12111 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A3P12111 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A3P12111 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 RPL34P27-201ENST00000428810 349 ntBASIC5.42□□□□□ -1.54
COL6A3P12111 AP003080.1-202ENST00000526526 915 ntBASIC5.42□□□□□ -1.54
COL6A3P12111 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.42□□□□□ -1.54
COL6A3P12111 AC093014.1-201ENST00000548926 724 ntBASIC5.42□□□□□ -1.54
COL6A3P12111 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A3P12111 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.42□□□□□ -1.54
COL6A3P12111 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.42□□□□□ -1.54
COL6A3P12111 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC5.42□□□□□ -1.54
COL6A3P12111 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC5.42□□□□□ -1.54
COL6A3P12111 EEA1-201ENST00000322349 9875 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 RSL1D1-204ENST00000571133 5483 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL6A3P12111 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL6A3P12111 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 RPL23AP17-201ENST00000401064 499 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.41□□□□□ -1.54
COL6A3P12111 ZRANB2-AS1-202ENST00000450461 553 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 AC021106.1-201ENST00000509020 1058 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 OR8R1P-201ENST00000543943 764 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 AC027348.2-201ENST00000624375 642 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 AC074101.1-201ENST00000637861 241 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 COL6A4P1-202ENST00000487147 4317 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 SPATA31D1-201ENST00000344803 4833 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
COL6A3P12111 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
COL6A3P12111 OR4K17-201ENST00000315543 1032 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 Z97832.1-201ENST00000402490 328 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 AC092647.1-201ENST00000420654 287 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 YME1L1P1-201ENST00000429435 297 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 RPS3AP12-201ENST00000443616 753 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 AC079168.2-201ENST00000453977 416 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 AP000797.2-201ENST00000475768 606 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 RN7SL319P-201ENST00000480656 221 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.41□□□□□ -1.54
COL6A3P12111 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.41□□□□□ -1.54
COL6A3P12111 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.41□□□□□ -1.54
COL6A3P12111 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 SVOP-205ENST00000610966 6813 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 SPATA31B1P-201ENST00000434692 4016 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 DIO2-202ENST00000438257 6136 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 MAST4-204ENST00000405643 7713 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
COL6A3P12111 UTY-203ENST00000362096 4990 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC5.41□□□□□ -1.54
COL6A3P12111 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
COL6A3P12111 RHOBTB1-202ENST00000357917 4339 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
COL6A3P12111 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
COL6A3P12111 RNU6-1279P-201ENST00000383917 103 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.41□□□□□ -1.54
COL6A3P12111 OR2B7P-201ENST00000429302 934 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 IGHV1-14-201ENST00000523391 241 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 AP000843.1-201ENST00000624880 701 ntBASIC5.41□□□□□ -1.54
COL6A3P12111 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 LTBP1-207ENST00000418533 5164 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A3P12111 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.41□□□□□ -1.54
COL6A3P12111 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL6A3P12111 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.4□□□□□ -1.54
COL6A3P12111 AL022323.3-201ENST00000623888 5388 ntBASIC5.4□□□□□ -1.54
COL6A3P12111 SDAD1P1-202ENST00000524156 2051 ntBASIC5.4□□□□□ -1.54
COL6A3P12111 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms