Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 RBMY2QP-201ENST00000429799 1147 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 RPS3AP38-201ENST00000435889 763 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 TRBV5-2-201ENST00000489095 273 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 RPL17P2-201ENST00000491913 451 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 CDC42EP3P1-201ENST00000601004 764 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 AC025574.2-201ENST00000615621 514 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 AC114876.1-201ENST00000490962 1366 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 DMD-202ENST00000343523 5623 ntTSL 5 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 RNA5SP91-201ENST00000390902 119 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 CEACAMP9-201ENST00000442990 513 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 BMPR1APS2-201ENST00000527904 1012 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 AC087821.1-201ENST00000623639 567 ntBASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC10.61□□□□□ -0.71
SHROOM4Q9ULL8 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 RPS29P33-201ENST00000456717 146 ntBASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 RNU1-88P-201ENST00000459274 128 ntBASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 BRD9P1-201ENST00000529855 560 ntBASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 BLZF2P-201ENST00000553776 1130 ntBASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 AC015849.6-201ENST00000605454 474 ntBASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC10.6□□□□□ -0.71
SHROOM4Q9ULL8 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 AC107980.1-201ENST00000558671 3355 ntBASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 AL449283.1-201ENST00000602631 3403 ntBASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 DUTP5-201ENST00000406790 469 ntBASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 HNRNPA3P4-201ENST00000427514 803 ntBASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 AL049745.1-201ENST00000433953 286 ntBASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 AC078899.1-201ENST00000521432 1185 ntBASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 PCA3_2.1-201ENST00000612507 409 ntBASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 AC087385.3-201ENST00000620477 187 ntBASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 AC012618.3-205ENST00000637896 1496 ntBASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
SHROOM4Q9ULL8 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 RNA5SP326-201ENST00000363209 110 ntBASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 AL034549.2-201ENST00000618285 3373 ntBASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 DMD-222ENST00000474231 5209 ntTSL 5 BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC10.58□□□□□ -0.72
SHROOM4Q9ULL8 ZNF840P-201ENST00000504759 1996 ntBASIC10.57□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms