Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 DPRXP5-201ENST00000604662 539 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC068726.1-201ENST00000610993 341 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC011472.4-201ENST00000615848 491 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC139792.2-201ENST00000624218 587 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC114546.4-201ENST00000624413 369 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC073488.9-201ENST00000631601 754 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 MIR3974-201ENST00000637126 96 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 LINC02211-204ENST00000642024 1070 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AL591848.4-201ENST00000567832 3472 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 MIR191-201ENST00000384873 92 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AL356131.1-201ENST00000405826 414 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AL008987.1-201ENST00000415528 237 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 NANOGP2-201ENST00000435391 727 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AL353093.1-201ENST00000441292 436 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 ATG12P2-201ENST00000456830 416 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 PSMC1P13-201ENST00000458195 985 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 PSAT1P4-201ENST00000466500 526 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 PRDX3P4-201ENST00000470828 747 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC093890.1-201ENST00000502554 540 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC092593.2-201ENST00000513866 913 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC138517.1-201ENST00000515724 568 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 SCARNA5-201ENST00000516201 276 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC008429.2-201ENST00000523057 864 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AP000926.4-201ENST00000527351 454 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AL442163.2-201ENST00000553912 710 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 RN7SL208P-201ENST00000577964 296 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AL356986.1-201ENST00000604085 341 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC009237.15-201ENST00000610252 501 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 VN1R74P-201ENST00000613259 503 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AL445647.2-201ENST00000615170 130 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC241377.1-201ENST00000619797 406 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 LINC01808-202ENST00000641680 1116 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 PARP4P1-201ENST00000435945 2337 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 AC105114.1-201ENST00000624795 1862 ntBASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.51□□□□□ -1.37
TRIM39Q9HCM9 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AP003486.1-201ENST00000525716 3994 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AC093297.3-201ENST00000607056 2517 ntBASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms