Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 AC005341.1-201ENST00000571086 708 ntBASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 AC099654.6-201ENST00000636487 512 ntBASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 AC006600.2-201ENST00000624834 2506 ntBASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 U3.3-201ENST00000362986 216 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 MIR105-1-201ENST00000385222 81 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 RN7SL354P-201ENST00000469282 294 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 RPL7P16-201ENST00000479738 738 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AP003789.1-201ENST00000617737 605 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 FHIT-201ENST00000341848 174 ntTSL 3 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 NPM1P40-201ENST00000412758 733 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 MGAT2P2-201ENST00000427194 797 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 CNOT7P1-201ENST00000429006 852 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC008072.1-201ENST00000434254 824 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC002075.1-201ENST00000457396 676 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 YWHABP2-201ENST00000540201 713 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC060766.1-201ENST00000590824 627 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 AC068790.7-201ENST00000602347 528 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 OR4F13P-202ENST00000560066 2054 ntBASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
SHANK3Q9BYB0 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 AC005225.5-201ENST00000623547 2225 ntBASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 MAK-202ENST00000354489 3941 ntTSL 5 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 RNA5SP455-201ENST00000365190 119 ntBASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 OR10T1P-201ENST00000424327 947 ntBASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 AC093655.2-201ENST00000425735 631 ntBASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 KCTD10P1-201ENST00000434203 625 ntBASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 KRT8P51-201ENST00000438938 274 ntBASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 AC092754.1-201ENST00000472975 479 ntBASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms