Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC7.11□□□□□ -1.27
ABCA3Q99758 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
ABCA3Q99758 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
ABCA3Q99758 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
ABCA3Q99758 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
ABCA3Q99758 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC7.11□□□□□ -1.27
ABCA3Q99758 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
ABCA3Q99758 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
ABCA3Q99758 AC016745.2-201ENST00000608834 3443 ntBASIC7.11□□□□□ -1.27
ABCA3Q99758 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
ABCA3Q99758 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
ABCA3Q99758 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC7.11□□□□□ -1.27
ABCA3Q99758 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
ABCA3Q99758 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
ABCA3Q99758 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC7.11□□□□□ -1.27
ABCA3Q99758 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
ABCA3Q99758 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC7.1□□□□□ -1.27
ABCA3Q99758 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
ABCA3Q99758 AC114774.1-201ENST00000507410 1770 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 Y_RNA.126-201ENST00000363382 111 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 RNA5SP479-201ENST00000364858 117 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 RNA5SP251-201ENST00000410614 137 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
ABCA3Q99758 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC7.1□□□□□ -1.27
ABCA3Q99758 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC7.1□□□□□ -1.27
ABCA3Q99758 RPL7AP28-201ENST00000464513 571 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
ABCA3Q99758 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC7.1□□□□□ -1.27
ABCA3Q99758 RNA5SP43-201ENST00000516559 110 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC7.1□□□□□ -1.27
ABCA3Q99758 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 AC098935.2-201ENST00000604222 466 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
ABCA3Q99758 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC7.1□□□□□ -1.27
ABCA3Q99758 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
ABCA3Q99758 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
ABCA3Q99758 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
ABCA3Q99758 AC140479.2-201ENST00000421567 3130 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 EEF1A1P33-201ENST00000554413 1362 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
ABCA3Q99758 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
ABCA3Q99758 BX284613.1-201ENST00000452221 1641 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
ABCA3Q99758 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
ABCA3Q99758 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
ABCA3Q99758 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
ABCA3Q99758 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 RPS4XP16-201ENST00000427198 791 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC7.1□□□□□ -1.27
ABCA3Q99758 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC7.1□□□□□ -1.27
ABCA3Q99758 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC7.1□□□□□ -1.27
ABCA3Q99758 RPS4XP20-201ENST00000505751 772 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 IGBP1P5-201ENST00000507524 1000 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 COX6B1P5-201ENST00000509843 249 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC7.1□□□□□ -1.27
ABCA3Q99758 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
ABCA3Q99758 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 AC011453.2-201ENST00000603737 729 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 AL391358.1-201ENST00000605342 190 ntBASIC7.1□□□□□ -1.27
ABCA3Q99758 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
ABCA3Q99758 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
ABCA3Q99758 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
ABCA3Q99758 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
ABCA3Q99758 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 SDAD1P1-202ENST00000524156 2051 ntBASIC7.09□□□□□ -1.27
ABCA3Q99758 AC007114.2-201ENST00000576014 4281 ntBASIC7.09□□□□□ -1.27
ABCA3Q99758 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC7.09□□□□□ -1.27
ABCA3Q99758 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC7.09□□□□□ -1.27
ABCA3Q99758 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
ABCA3Q99758 GLULP6-201ENST00000399502 913 ntBASIC7.09□□□□□ -1.27
ABCA3Q99758 AL009179.1-201ENST00000406085 265 ntBASIC7.09□□□□□ -1.27
ABCA3Q99758 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC7.09□□□□□ -1.27
ABCA3Q99758 PRPF38AP2-201ENST00000438179 851 ntBASIC7.09□□□□□ -1.27
ABCA3Q99758 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC7.09□□□□□ -1.27
ABCA3Q99758 IGBP1P3-201ENST00000447449 1000 ntBASIC7.09□□□□□ -1.27
ABCA3Q99758 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC7.09□□□□□ -1.27
ABCA3Q99758 RPS23P7-201ENST00000466210 444 ntBASIC7.09□□□□□ -1.27
ABCA3Q99758 RN7SL481P-201ENST00000477764 299 ntBASIC7.09□□□□□ -1.27
ABCA3Q99758 HPRT1P1-201ENST00000509498 657 ntBASIC7.09□□□□□ -1.27
ABCA3Q99758 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
ABCA3Q99758 AC091042.1-201ENST00000579213 173 ntBASIC7.09□□□□□ -1.27
ABCA3Q99758 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
ABCA3Q99758 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.28
ABCA3Q99758 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms